PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo21G0041200

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Trihelix

Protein Properties

Length: 694aa MW: 75640.4 Da PI: 6.5326

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo21G0041200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	99.4	3.1e-31	93	177	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laL+++r+em+ ++r++ lk+plWeevs+k+++ g++rs+k+Ckek+en++k+yk++k+g+ +r++++s +++f+qlea Spipo21G0041200 93 RWPQEETLALLRIRSEMDAAFRDATLKGPLWEEVSRKLSQLGYKRSAKKCKEKFENVQKYYKRTKDGRAGRQDGKS--YRFFRQLEA 177 8*******************************************************************866665..*****85 PP
2	trihelix	107.4	9.4e-34	438	523	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi +r+ me+r++++ k+plWee+++ mr+ g++rs+k+Ckekwen+nk++kk+k+++kkr +e+ +tcpyf+ql+a Spipo21G0041200 438 RWPKSEVHALISLRSGMETRYQEAGPKAPLWEEIAAGMRRMGYNRSSKRCKEKWENINKYFKKVKDSKKKR-PEDAKTCPYFHQLDA 523 8*******************************************************************8.99999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	4.5E-4	90	152	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.108	92	150	IPR017877	Myb-like domain
CDD	cd12203	1.01E-28	92	157	No hit	No description
Pfam	PF13837	9.3E-22	92	178	No hit	No description
PROSITE profile	PS50090	7.445	431	495	IPR017877	Myb-like domain
SMART	SM00717	0.043	435	497	IPR001005	SANT/Myb domain
Pfam	PF13837	2.7E-23	437	524	No hit	No description
CDD	cd12203	2.38E-28	437	498	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MSPFVAAGTG SRAHVLGIPQ QPHQQKAEGG QHQPPLPPSP MLAEAPTPMT SRQPLRTGNF 60 DELAPVAPEG FSDEGTMAPV GEETDKGGVP GNRWPQEETL ALLRIRSEMD AAFRDATLKG 120 PLWEEVSRKL SQLGYKRSAK KCKEKFENVQ KYYKRTKDGR AGRQDGKSYR FFRQLEALYG 180 STKTPATTAA GGAADLLPPS VDMGSSSARL QPSPLNAIPP HLGASPHLIP DRVGALADFS 240 SDDSSASDSD GQDTEEGLPG EQTKRKRKGG SGGGGGKKKM MAFFEGLTRQ VMERQEAMQQ 300 KFLEMIEKRE QDKMIRDEAW RRQEMARLTR EHEAMAQERA MSATRDATIL AFLQKLTGHT 360 ISLPSAIATA VAPPAAPQQQ AVNMMASVPT SSPAKRPQPP LQTVHQQASE LLGRVQAPSL 420 DVVLQPETQE VMDLASSRWP KSEVHALISL RSGMETRYQE AGPKAPLWEE IAAGMRRMGY 480 NRSSKRCKEK WENINKYFKK VKDSKKKRPE DAKTCPYFHQ LDALYRKKNV GAGSSSSDHH 540 RADIEQHEVS FPTSQPVPQE SHLESDLKRD NGREAEGNGS SSLSGSGRSG FVDEGTSADG 600 PAKKPEDIMK DLMDQQAQRE AEDSDKLEET DSDGVEQADD DDDEDDEKGK MAYKIQYQQR 660 PVVNGSSSGG ENQSAAAAAA AAAAAGSFMA MVQ*

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MSPFVAAGTG SRAHVLGIPQ QPHQQKAEGG QHQPPLPPSP MLAEAPTPMT SRQPLRTGNF  60
DELAPVAPEG FSDEGTMAPV GEETDKGGVP GNRWPQEETL ALLRIRSEMD AAFRDATLKG  120
PLWEEVSRKL SQLGYKRSAK KCKEKFENVQ KYYKRTKDGR AGRQDGKSYR FFRQLEALYG  180
STKTPATTAA GGAADLLPPS VDMGSSSARL QPSPLNAIPP HLGASPHLIP DRVGALADFS  240
SDDSSASDSD GQDTEEGLPG EQTKRKRKGG SGGGGGKKKM MAFFEGLTRQ VMERQEAMQQ  300
KFLEMIEKRE QDKMIRDEAW RRQEMARLTR EHEAMAQERA MSATRDATIL AFLQKLTGHT  360
ISLPSAIATA VAPPAAPQQQ AVNMMASVPT SSPAKRPQPP LQTVHQQASE LLGRVQAPSL  420
DVVLQPETQE VMDLASSRWP KSEVHALISL RSGMETRYQE AGPKAPLWEE IAAGMRRMGY  480
NRSSKRCKEK WENINKYFKK VKDSKKKRPE DAKTCPYFHQ LDALYRKKNV GAGSSSSDHH  540
RADIEQHEVS FPTSQPVPQE SHLESDLKRD NGREAEGNGS SSLSGSGRSG FVDEGTSADG  600
PAKKPEDIMK DLMDQQAQRE AEDSDKLEET DSDGVEQADD DDDEDDEKGK MAYKIQYQQR  660
PVVNGSSSGG ENQSAAAAAA AAAAAGSFMA MVQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	KRSAKKCKE
2	267	276	KGGSGGGGGK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389115.1	1e-180	PREDICTED: trihelix transcription factor GTL1 isoform X1
Refseq	XP_010933772.1	1e-180	trihelix transcription factor GTL1 isoform X1
TrEMBL	A0A3S3N709	1e-175	A0A3S3N709_9MAGN; Trihelix transcription factor GTL1 isoform X1
STRING	EOY23769	1e-167	(Theobroma cacao)
STRING	GSMUA_Achr11P03520_001	1e-167	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	4e-63	GT-2-like 1

Link Out ? help Back to Top
Phytozome	Spipo21G0041200