PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo21G0041200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Trihelix | ||||||||
Protein Properties | Length: 694aa MW: 75640.4 Da PI: 6.5326 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 99.4 | 3.1e-31 | 93 | 177 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laL+++r+em+ ++r++ lk+plWeevs+k+++ g++rs+k+Ckek+en++k+yk++k+g+ +r++++s +++f+qlea Spipo21G0041200 93 RWPQEETLALLRIRSEMDAAFRDATLKGPLWEEVSRKLSQLGYKRSAKKCKEKFENVQKYYKRTKDGRAGRQDGKS--YRFFRQLEA 177 8*********************************************************************866665..*******85 PP | |||||||
2 | trihelix | 107.4 | 9.4e-34 | 438 | 523 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi +r+ me+r++++ k+plWee+++ mr+ g++rs+k+Ckekwen+nk++kk+k+++kkr +e+ +tcpyf+ql+a Spipo21G0041200 438 RWPKSEVHALISLRSGMETRYQEAGPKAPLWEEIAAGMRRMGYNRSSKRCKEKWENINKYFKKVKDSKKKR-PEDAKTCPYFHQLDA 523 8*********************************************************************8.99999********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.5E-4 | 90 | 152 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.108 | 92 | 150 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.01E-28 | 92 | 157 | No hit | No description |
Pfam | PF13837 | 9.3E-22 | 92 | 178 | No hit | No description |
PROSITE profile | PS50090 | 7.445 | 431 | 495 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.043 | 435 | 497 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 2.7E-23 | 437 | 524 | No hit | No description |
CDD | cd12203 | 2.38E-28 | 437 | 498 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MSPFVAAGTG SRAHVLGIPQ QPHQQKAEGG QHQPPLPPSP MLAEAPTPMT SRQPLRTGNF 60 DELAPVAPEG FSDEGTMAPV GEETDKGGVP GNRWPQEETL ALLRIRSEMD AAFRDATLKG 120 PLWEEVSRKL SQLGYKRSAK KCKEKFENVQ KYYKRTKDGR AGRQDGKSYR FFRQLEALYG 180 STKTPATTAA GGAADLLPPS VDMGSSSARL QPSPLNAIPP HLGASPHLIP DRVGALADFS 240 SDDSSASDSD GQDTEEGLPG EQTKRKRKGG SGGGGGKKKM MAFFEGLTRQ VMERQEAMQQ 300 KFLEMIEKRE QDKMIRDEAW RRQEMARLTR EHEAMAQERA MSATRDATIL AFLQKLTGHT 360 ISLPSAIATA VAPPAAPQQQ AVNMMASVPT SSPAKRPQPP LQTVHQQASE LLGRVQAPSL 420 DVVLQPETQE VMDLASSRWP KSEVHALISL RSGMETRYQE AGPKAPLWEE IAAGMRRMGY 480 NRSSKRCKEK WENINKYFKK VKDSKKKRPE DAKTCPYFHQ LDALYRKKNV GAGSSSSDHH 540 RADIEQHEVS FPTSQPVPQE SHLESDLKRD NGREAEGNGS SSLSGSGRSG FVDEGTSADG 600 PAKKPEDIMK DLMDQQAQRE AEDSDKLEET DSDGVEQADD DDDEDDEKGK MAYKIQYQQR 660 PVVNGSSSGG ENQSAAAAAA AAAAAGSFMA MVQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 143 | KRSAKKCKE |
2 | 267 | 276 | KGGSGGGGGK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389115.1 | 1e-180 | PREDICTED: trihelix transcription factor GTL1 isoform X1 | ||||
Refseq | XP_010933772.1 | 1e-180 | trihelix transcription factor GTL1 isoform X1 | ||||
TrEMBL | A0A3S3N709 | 1e-175 | A0A3S3N709_9MAGN; Trihelix transcription factor GTL1 isoform X1 | ||||
STRING | EOY23769 | 1e-167 | (Theobroma cacao) | ||||
STRING | GSMUA_Achr11P03520_001 | 1e-167 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 4e-63 | GT-2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Spipo21G0041200 |