PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo21G0031600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 378aa    MW: 41084.2 Da    PI: 6.6905
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo21G0031600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.4e-09134154526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f++ G Ck+Gd C FaHg
  Spipo21G0031600 134 ACPDFRK-GSCKRGDACEFAHG 154
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.61E-5129158IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-6129155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.779130156IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-7134154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5134156IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.028164188IPR000571Zinc finger, CCCH-type
SMARTSM0035612164187IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MMLGEGISPT PAIRIPAWPG CDLRPGSGLS CGNGAGAGAG EFSPYLYGEG GGVKSILLLP  60
TASEGYMSDE GGEESEAVDS PVDAYSCDEF RMYEFKVRRC PRGRSHDWTE CPYAHPGEKA  120
RRRDPRKFHY SGTACPDFRK GSCKRGDACE FAHGVFECWL HPARYRTQPC KDGVNCRRRV  180
CFFAHTPEQL RILPQTQQQQ SPRTPAASDS YDDSPLRYHA FDTYVTQNMF SSSPGMTPPS  240
DSPPPSPSGP PLRRVSLTMG SPVNEVLASL RQLQLSKAMS VPASCGLQVS GMGSPQGVTV  300
RPGFCSLPAT PMGGNGGGFL EVWDEPKERV ESGRNLRAKL YEKLSKENFM GTPMEVYHDE  360
AAAVVGPDVD WVSELLK*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597894.11e-133zinc finger CCCH domain-containing protein 20-like
RefseqXP_021637323.11e-134zinc finger CCCH domain-containing protein 20-like
SwissprotQ9FU271e-109C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A1D1XN001e-157A0A1D1XN00_9ARAE; Zinc finger CCCH domain-containing protein 2 (Fragment)
STRINGcassava4.1_009450m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-100C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]