PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G19810.1 | ||||||||
Common Name | AtOZF1, AtTZF2, F6F22.16, OZF1, TZF2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 359aa MW: 39845.4 Da PI: 6.416 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18 | 5e-06 | 123 | 143 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck+Gd C F+Hg AT2G19810.1 123 ACPEFRK-GCCKRGDACEFSHG 143 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.484 | 75 | 107 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-4 | 118 | 144 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.699 | 119 | 145 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.568 | 153 | 177 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.53 | 153 | 176 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MMIGESHRGF NPTVHIPPWP LSEDLTVSDI YGSPDGGSSM MEALAELQRY LPSNEPDPDS 60 DPDLSGPDSP IDAYTCDHFR MYEFKVRRCA RGRSHDWTEC PYAHPGEKAR RRDPRKFHYS 120 GTACPEFRKG CCKRGDACEF SHGVFECWLH PARYRTQPCK DGGNCRRRVC FFAHSPDQIR 180 VLPNQSPDRV DSFDVLSPTI RRAFQFSISP SSNSPPVSPR GDSDSSCSLL SRSLGSNLGN 240 DVVASLRNLQ LNKVKSSLSS SYNNQIGGYG SGFGSPRGSV LGPGFRSLPT TPTRPGFMNI 300 WENGLEEEPA MERVESGREL RAQLFEKLSK ENCMGRIEPD PDQGAGDTPD VGWVSDLVM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.12895 | 0.0 | flower| leaf| vegetative tissue |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30680798 | 0.0 | ||||
Genevisible | 266695_at | 0.0 | ||||
Expression Atlas | AT2G19810 | - | ||||
AtGenExpress | AT2G19810 | - | ||||
ATTED-II | AT2G19810 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G19810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G19810 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005169 | 0.0 | AC005169.3 Arabidopsis thaliana chromosome 2 clone F6F22 map mi148, complete sequence. | |||
GenBank | AY084253 | 0.0 | AY084253.1 Arabidopsis thaliana clone 101255 mRNA, complete sequence. | |||
GenBank | AY136395 | 0.0 | AY136395.1 Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g19810) mRNA, complete cds. | |||
GenBank | BT002114 | 0.0 | BT002114.1 Arabidopsis thaliana putative CCCH-type zinc finger protein (At2g19810) mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_179571.1 | 0.0 | CCCH-type zinc finger family protein | ||||
Swissprot | O82199 | 0.0 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | A0A178VX61 | 0.0 | A0A178VX61_ARATH; TZF2 | ||||
STRING | AT2G19810.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1249 | 27 | 88 | Representative plant | OGRP1170 | 16 | 44 |
Link Out ? help Back to Top | |
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Phytozome | AT2G19810.1 |
Entrez Gene | 816500 |
iHOP | AT2G19810 |
wikigenes | AT2G19810 |