PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo21G0026900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 719aa    MW: 77574.8 Da    PI: 6.0937
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo21G0026900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.3e-08497520226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      k  +C+f+++ G C+ G+ CkF+H+
  Spipo21G0026900 497 KVIPCSFYQK-GRCQKGNLCKFSHD 520
                      5669******.*************7 PP
2zf-CCCH20.58.6e-07529548525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      +C ffar GtC  Gd C+F H
  Spipo21G0026900 529 PCTFFAR-GTCLKGDDCPFDH 548
                      7******.************* PP
3zf-CCCH18.24.3e-06554574525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      +C+++   G C++Gd+C F+H
  Spipo21G0026900 554 PCHNYVSEGRCNRGDSCLFSH 574
                      79999999************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.99495522IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5495521IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6496520IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-4497520IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-5497520IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-6524550IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563524551IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6525549IPR000571Zinc finger, CCCH-type
SMARTSM003560.35552576IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6553577IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-4554575IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169554577IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MEGSPSRPPV SLRLSHLDSG TYRAVLRLLA HCVQAQARAP PASPRLSPSR AAHGGTAGPS  60
GEREWSGAAE GAAVFDAAPG EGNRGMEEAR EHNGQECHQE NGVRDLPEDG AAQGFHSVAE  120
SGVRERSEDL VGSGPSLADA HDEIPPPVEG LGLRETRAGL LDNSRNVLSS ECPVDSPHLL  180
EELEQKKEDD PGGRDSARDV ELLGSGEVSP PVDASELGED RREARVVDES GCHKLRHDDR  240
QTELAHEDPR LPSAQPRDSC SEKEQGMIEQ IEIHDSSLPS TGGSGPTEFS EGKKTPSLSA  300
IDENEMEEGE IPGEVGASES HLVADDGMLP DTMDTLMNQT ASTSIYQTKE TMCSAACEPN  360
QPVVGVAGLS PEKKKKNSEA SKEHAGKIKK KPGKPLNIMV DLELSKQMSG VITRDAGCEH  420
TISSSFSSSE VCIRAIQREE DASEMKDVKV QEKTKRGPLT ENRKEKKKLA KKRKRAEINK  480
KLGVKRLKLE MPSKTRKVIP CSFYQKGRCQ KGNLCKFSHD MIPDTKSMPC TFFARGTCLK  540
GDDCPFDHEL SKYPCHNYVS EGRCNRGDSC LFSHKVPTGE LPAASSGKPS LQNHMNLSNS  600
APKDAIPGEK PSILRTPTEL MRSKQPVSVP KGVCFLSFGG GNKQLHGLAS ERGGSSVRVQ  660
RREERAMSEE PRRLSPPGKS PLLVLTSAET RPLEDLPSEA AGDDASKILD EFLLSGIA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1469475AKKRKRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.22e-06C3H family protein