PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G08505.2 | ||||||||
Common Name | MKRN, T8G24.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 323aa MW: 36562.4 Da PI: 7.3784 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.1 | 9.5e-06 | 4 | 26 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + lC+ f+ G C G++C F+H+ AT3G08505.2 4 RILCK-FFVHGSCLKGENCEFSHD 26 569**.7777*************6 PP | |||||||
2 | zf-CCCH | 22.6 | 1.9e-07 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ +C yG+rC++ H+ AT3G08505.2 34 VCTFYQK-RICLYGSRCRYDHV 54 5******.*************7 PP | |||||||
3 | zf-CCCH | 20.8 | 6.9e-07 | 104 | 126 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C+ +Hg AT3G08505.2 104 YPICS-FAAAGDCPRGNQCPHMHG 126 78999.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.84 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 2 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-7 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 6 | 29 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.859 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.36 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-4 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.028 | 101 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.155 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 5.89E-13 | 158 | 234 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 2.5E-10 | 162 | 229 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 8.31E-4 | 169 | 229 | No hit | No description |
Pfam | PF00097 | 4.3E-8 | 170 | 227 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.489 | 170 | 228 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 2.5E-7 | 170 | 227 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 194 | 203 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.15 | 257 | 285 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.126 | 257 | 286 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016567 | Biological Process | protein ubiquitination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016874 | Molecular Function | ligase activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MSDRILCKFF VHGSCLKGEN CEFSHDSKDP PNNVCTFYQK RICLYGSRCR YDHVRAASNL 60 PLSSDSESLD RSISTTPSRH LQQQGDNNDG DKSSNVYCIH PREYPICSFA AAGDCPRGNQ 120 CPHMHGDLCN TCGKKCLHPF RPEEREEHTK ECEKKQKHIE ALKQSQDIEC SVCLDRILSK 180 ATPGERKFGL LTECDHPFCI QCIRNWRSSA PVSGMDVNST LRACPICRKL SYFVVPSVVW 240 YSSPEEKKEI IDIYKAKLRS IDCKHFNFGN GNCPFGASCF YKHAYSDGHL EEVVLRHLGS 300 QEGETVITDS IRLSEFLGGL QIF |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT3G08505 | |||||
AtGenExpress | AT3G08505 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G08505.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G08505 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY070366 | 0.0 | AY070366.1 Arabidopsis thaliana unknown protein (At3g08505) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001325802.1 | 0.0 | zinc finger (CCCH-type/C3HC4-type RING finger) family protein | ||||
Refseq | NP_850540.1 | 0.0 | zinc finger (CCCH-type/C3HC4-type RING finger) family protein | ||||
Refseq | NP_974255.1 | 0.0 | zinc finger (CCCH-type/C3HC4-type RING finger) family protein | ||||
Swissprot | Q6IDS6 | 0.0 | C3H35_ARATH; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A178V907 | 0.0 | A0A178V907_ARATH; Uncharacterized protein | ||||
STRING | AT3G08505.2 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT3G08505.2 |
Entrez Gene | 819998 |
iHOP | AT3G08505 |
wikigenes | AT3G08505 |
Publications ? help Back to Top | |||
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