PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo21G0024900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GATA
Protein Properties Length: 277aa    MW: 30465.8 Da    PI: 10.5621
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo21G0024900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-19150183134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Spipo21G0024900 150 CSDCNTTKTPLWRSGPQGPKSLCNACGIRQRKAR 183
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.42E-13143184No hitNo description
SMARTSM004012.3E-19144196IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.809144180IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-15148183IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.04E-12149177No hitNo description
PfamPF003202.8E-17150183IPR000679Zinc finger, GATA-type
PROSITE patternPS003440150175IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEAAWFGQPF RPTWLVGDLL PSSSSPVRRL LGRLRSIGFP LCPWLRFRRP PGNPHWFPSA  60
ESSDPGGLMS AQAPAKHEEG DLSDDGPAEW TPSKITFMRR MMNSDGTAVN DRRRIVVELQ  120
DQPESEEDKT HSDHIDNRHC HVSVAPTRVC SDCNTTKTPL WRSGPQGPKS LCNACGIRQR  180
KARRAMAAAA AAGLTGGLIP TVAPSKVRKE KTSGFQRTVP FKKRCRLTPG QTRTSLLFDE  240
FTISLSKSSA LHRVFPQDEK EAALLLMALS SGLIRG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020096791.15e-64GATA transcription factor 21-like
TrEMBLA0A199VSM16e-63A0A199VSM1_ANACO; Putative GATA transcription factor 22 (Fragment)
STRINGXP_008793253.13e-51(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-24cytokinin-responsive gata factor 1