PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo21G0004800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 671aa    MW: 74247.1 Da    PI: 8.5005
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo21G0004800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-09612656244
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                      ++W++  +  l++a k ++++   +W++Ia+ ++ g+t +qck ++
  Spipo21G0004800 612 DAWSATQERALIQALKTFPKEasqRWERIAASIP-GKTVNQCKKKF 656
                      58********************************.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1103.7E-2195201IPR001623DnaJ domain
SuperFamilySSF465654.06E-2096177IPR001623DnaJ domain
SMARTSM002713.4E-1498173IPR001623DnaJ domain
PROSITE profilePS5007618.28899181IPR001623DnaJ domain
CDDcd062572.15E-1399170IPR001623DnaJ domain
PfamPF002266.4E-1899178IPR001623DnaJ domain
PRINTSPR006255.8E-8104122IPR001623DnaJ domain
PRINTSPR006255.8E-8122137IPR001623DnaJ domain
PRINTSPR006255.8E-8153173IPR001623DnaJ domain
PROSITE patternPS006360158177IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.657468511IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.600.001470515IPR009057Homeodomain-like
SuperFamilySSF466895.83E-7471516IPR009057Homeodomain-like
SMARTSM007175.0E-5472525IPR001005SANT/Myb domain
PfamPF002491.2E-5475514IPR001005SANT/Myb domain
CDDcd001672.41E-4475515No hitNo description
PROSITE profilePS512939.62609664IPR017884SANT domain
SMARTSM007174.4E-8610662IPR001005SANT/Myb domain
SuperFamilySSF466894.79E-9611657IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-6613656IPR009057Homeodomain-like
PfamPF002492.3E-8613656IPR001005SANT/Myb domain
CDDcd001671.22E-7613656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MDVKRRTPLI SYSPELVDGE PILLASNCLP VKASNFEPAG HSFHSAALKF SGICDDEEED  60
ADGQSVSSDD KSQGGYVPSP ESYSSKGKKK SGAGSKQQDH YALLGLSHLR FLATEEQIRK  120
SYRETALKHH PDKQAALLLA EETEAAKQAK KDEIENHFKA VQEAYEVLID PVKRRIYDST  180
DEFDDDVPTE CAPQDFFKVF GPAFMRNGRW SVGQPVPALG DESTPLGEVD GFYNFWYGFR  240
SWREFPHADE FDLEQAESRE HRRWMERQNA KLREKAKKEE HARVRMLVDN AYKRDPRILR  300
RKEEEKAEKK RKKEAKYLAR KLQEEEAARA AEEERSKKEE DDRRAAELAL NQKKLKEKEK  360
KLLRKERSRL RALSASVVSG KLSGISEDDV EGLCMSLEME QLRQLCDEME GAAEGAARAQ  420
RLKTALSAAD SGSSKQDDSS TRSNGSPSSG AKTNGVGLPA KQEVPLNAYE KKERPWGEEE  480
IAMLRKGMHK YPKGTSRRWE VISEYMGTGR SVDEILKASK TVLLQKPDSS KAFDSFLDRR  540
KPAQAIASPL TSRIEAGEPP AGGTGAAAAA AAAAAADAGE KRPTAAGSSS GQGKDGGAAP  600
VQNGAPPAAD PDAWSATQER ALIQALKTFP KEASQRWERI AASIPGKTVN QCKKKFALMR  660
ENFRSRKTAE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1818829813123Zuotin
5dje_B1e-1818829813123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308312KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019706263.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A1D1Y2L60.0A0A1D1Y2L6_9ARAE; DnaJ subfamily C member 2
STRINGXP_010067661.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain