PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G11450.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 647aa    MW: 73990.1 Da    PI: 8.8529
Description DnaJ domain ;Myb-like DNA-binding domain
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G11450.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.2e-07463505140
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      +++W++eE + l ++  ++++g   +W+ I++++g+gR+ +++
      AT3G11450.1 463 KQPWSKEEIDMLRKGMIKYPKGtsrRWEVISEYIGTGRSVEEI 505
                      79************************************99876 PP
2Myb_DNA-binding29.22.2e-09590634345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      +W+t  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
      AT3G11450.1 590 SWSTVQERALVQALKTFPKEtsqRWERVAAAVP-GKTMNQCKKKFA 634
                      7********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1106.7E-2195192IPR001623DnaJ domain
SuperFamilySSF465652.62E-2196177IPR001623DnaJ domain
SMARTSM002719.8E-1898173IPR001623DnaJ domain
CDDcd062573.00E-1299170IPR001623DnaJ domain
PfamPF002261.8E-1799178IPR001623DnaJ domain
PROSITE profilePS5007618.47199181IPR001623DnaJ domain
PRINTSPR006258.6E-9104122IPR001623DnaJ domain
PRINTSPR006258.6E-9122137IPR001623DnaJ domain
PRINTSPR006258.6E-9153173IPR001623DnaJ domain
PROSITE patternPS006360158177IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.295458513IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.2E-5462505IPR009057Homeodomain-like
SMARTSM007179.3E-7462515IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-7463507IPR009057Homeodomain-like
PfamPF002493.9E-6463505IPR001005SANT/Myb domain
CDDcd001672.83E-4465505No hitNo description
SMARTSM007178.7E-9587639IPR001005SANT/Myb domain
SuperFamilySSF466895.61E-9589643IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-5590635IPR009057Homeodomain-like
CDDcd001673.53E-6590637No hitNo description
PfamPF002491.0E-7590635IPR001005SANT/Myb domain
PROSITE profilePS500907.189590637IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006457Biological Processprotein folding
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000005anatomycultured plant cell
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MPSRRSESAI RLITYSEELV DGKPFFAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP  60
TDDEGGDKKV GDDKEKEYVP SFNSYANKGK KKSGTQQQDH YALLGLSNLR YLATEDQIRK  120
SYREAALKHH PDKLASLLLL EETEEAKEAK KDEIESRFKA IQEAYEVLMD PTRRRIFDST  180
DEFDDEVPSD CLPQDFFKVF GPAFKRNARW SVNQRIPDLG DENTPLKDVD KFYNFWYAFK  240
SWREFPDEEE HDLEQADSRE ERRWMEKENA KKTVKARKEE HARIRTLVDN AYRKDPRIVK  300
RKEEEKAEKQ QKKDAKIQAK KKQEEDAAIA AEEEKRRKEE EEKRAAESAQ QQKKTKEREK  360
KLLRKERNRL RTLSAPLVAQ RLLDISEEDI ENLCMSLNTE QLQNLCDKMG NKEGLELAKV  420
IKDGCNSSRN DEAESKEKVS KKTNGGTEPT TRVSQLDSST QKKQPWSKEE IDMLRKGMIK  480
YPKGTSRRWE VISEYIGTGR SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPSASITSPL  540
STREELGESL PTMTTTTNAK PSKETVVGKS SSSQSSDNNG EVGGSSDADS WSTVQERALV  600
QALKTFPKET SQRWERVAAA VPGKTMNQCK KKFAELKEII RNKKTGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1419529820123Zuotin
5dje_B2e-1419529820123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319337KKKQEEDAAIAAEEEKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.207100.0bud| floral meristem| flower| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO3341852550.0
Genevisible259284_at0.0
Expression AtlasAT3G11450-
AtGenExpressAT3G11450-
ATTED-IIAT3G11450-
Function -- GeneRIF ? help Back to Top
  1. Results suggest that GlsA1 and GlsA2 are an essential component of the machinery that maintains the integrity of meristematic tissue.[GlsA1]
    [PMID: 26826012]
  2. AtZRF1a/b play both PRC1-related and PRC1-unrelated functions in regulating plant growth and development.[AtZRF1a]
    [PMID: 27630184]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G11450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G11450
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0081530.0AC008153.5 Arabidopsis thaliana chromosome 3 BAC F24K9 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187752.20.0DnaJ and Myb-like DNA-binding domain-containing protein
TrEMBLF4J6A80.0F4J6A8_ARATH; DnaJ and Myb-like DNA-binding domain-containing protein
STRINGAT3G11450.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Representative plantOGRP38231521
Publications ? help Back to Top
  1. Guzmán-López JA,Abraham-Juárez MJ,Lozano-Sotomayor P,de Folter S,Simpson J
    Arabidopsis thaliana gonidialess A/Zuotin related factors (GlsA/ZRF) are essential for maintenance of meristem integrity.
    Plant Mol. Biol., 2016. 91(1-2): p. 37-51
    [PMID:26826012]
  2. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]