PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo20G0020900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MIKC_MADS
Protein Properties Length: 324aa    MW: 37002.3 Da    PI: 9.9135
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo20G0020900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.82.5e-2267115250
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                      +i+n++ rqvtfskRr g++KKAeEL  L daev +i+fsstg+l+ ys
  Spipo20G0020900  67 KIDNTTTRQVTFSKRRWGLFKKAEELALLFDAEVGLIVFSSTGELFKYS 115
                      69*********************************************98 PP
2K-box15.66.9e-071291853997
            K-box  39 lGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      + ed+++ +l +Lq+Le++Le+ l ++ ++K+  ++e+i+elq+k  +   + k+L+k+
  Spipo20G0020900 129 KREDIGEQTLGDLQNLEKELETELCRVLARKQ--MFEEIKELQQKRWRGMLHRKELQKQ 185
                      55899999**********************96..9**********99988888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.8E-3058117IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.98858118IPR002100Transcription factor, MADS-box
PROSITE patternPS00350060114IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-2360130IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-226080IPR002100Transcription factor, MADS-box
PfamPF003197.0E-2167114IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-228095IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-2295116IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MSKASDGLVQ HLTPLKHASA VPNLAKARIL FKEGKDSRDP GFRASNNVFF FANEKEEIAR  60
EKIKIRKIDN TTTRQVTFSK RRWGLFKKAE ELALLFDAEV GLIVFSSTGE LFKYSGNRPG  120
LRPILTQIKR EDIGEQTLGD LQNLEKELET ELCRVLARKQ MFEEIKELQQ KRWRGMLHRK  180
ELQKQERGVK AEVKVAVNFV LEFKSVSWRT PFTLGMVVDA RAFKSTVKAR NECRVEDSSE  240
QLAERSIEAR LPSNMKEEPK EREIEDEDQS RCCSVEVHSY RPPHIVISLG QQRGINLKSS  300
LPDVRQHGPD VGEETIKPSG TTR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.17e-21MIKC_MADS family protein