PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo20G0020800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MIKC_MADS
Protein Properties Length: 307aa    MW: 34251.4 Da    PI: 10.374
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo20G0020800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.7e-27959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+i+n++ rqvtfskRr g++KKA+EL +LCdaev vi+fss+gkl+eyss
  Spipo20G0020800  9 KKIDNSTARQVTFSKRRRGLFKKAKELAILCDAEVGVIVFSSNGKLFEYSS 59
                     68***********************************************96 PP
2K-box47.76.8e-171061563484
            K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                      ++R+++Ged++ L+l+eLq+Le++L+++l ++ ++K + ++e+i+elq+k 
  Spipo20G0020800 106 QLRQMKGEDIGGLTLEELQNLEKALQTGLCRVLARKGQQMVEEIKELQHKS 156
                      67***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.73161IPR002100Transcription factor, MADS-box
CDDcd002651.59E-40277No hitNo description
SuperFamilySSF554552.75E-31388IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.6886172IPR002487Transcription factor, K-box
PfamPF014866.9E-1395156IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAREKIKIKK IDNSTARQVT FSKRRRGLFK KAKELAILCD AEVGVIVFSS NGKLFEYSSN  60
SMKAIIERRS KHSRDDLKSV PTSPELQLQD SIRGSLSKYV SESDLQLRQM KGEDIGGLTL  120
EELQNLEKAL QTGLCRVLAR KGQQMVEEIK ELQHKSWNIL VTLPFLRGSP DAQLNIDNFP  180
FLESNLSPAR CKNKRGRNQT WKIVFTSPVA LLQLTRGRTT ACGTSHIRPT FSPTFLKRYR  240
GPLPENSQRT ADGESMAHGY LGVTLIVALF VRRPEEKTTD ILELGIPVGI SSRGIPTVGN  300
GDVLDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-17173173MEF2 CHIMERA
6byy_B3e-17173173MEF2 CHIMERA
6byy_C3e-17173173MEF2 CHIMERA
6byy_D3e-17173173MEF2 CHIMERA
6bz1_A3e-17173173MEF2 CHIMERA
6bz1_B3e-17173173MEF2 CHIMERA
6bz1_C3e-17173173MEF2 CHIMERA
6bz1_D3e-17173173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010926365.12e-61MADS-box protein JOINTLESS isoform X1
RefseqXP_010926366.12e-61MADS-box protein JOINTLESS isoform X1
RefseqXP_019707170.12e-61MADS-box protein JOINTLESS isoform X1
RefseqXP_019707171.12e-61MADS-box protein JOINTLESS isoform X2
SwissprotQ9FUY68e-58JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A1D1Z0G22e-62A0A1D1Z0G2_9ARAE; MADS-box protein SVP
STRINGXP_010277487.17e-59(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]