PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo20G0019100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 21812.3 Da PI: 7.6683 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1e-17 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ +g Wv+eIr p+ +r+r++lg++ tae Aa+a++aa ++l+g Spipo20G0019100 26 QYKGVRMRS-WGTWVSEIRAPN---QRTRIWLGSYSTAEAAARAYDAALLCLKG 75 7*****998.**********93...36************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.82E-17 | 25 | 83 | No hit | No description |
PROSITE profile | PS51032 | 21.72 | 26 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-10 | 26 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-30 | 26 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-19 | 26 | 84 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.1E-34 | 26 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-9 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-9 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MVKEVSAGTI NDAPSFHSDR GRRKKQYKGV RMRSWGTWVS EIRAPNQRTR IWLGSYSTAE 60 AAARAYDAAL LCLKGSSANL NFPSTSAHHH HSAVVMSPKS IQRVAAAAAA AAAAAAAAPH 120 SSSSPISFPA TRPTSPPSTS SSETTTVCVE ELLLNESGLE GLLTDFGGLP SSPKYGDPML 180 SGWDDFSPPM DQWGEEGGAN LWNFY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-14 | 25 | 83 | 4 | 63 | ATERF1 |
3gcc_A | 7e-14 | 25 | 83 | 4 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006386376.1 | 6e-41 | ethylene-responsive transcription factor ERF014 | ||||
Refseq | XP_011027567.1 | 6e-41 | PREDICTED: ethylene-responsive transcription factor ERF014-like | ||||
TrEMBL | A0A3S4NKW3 | 1e-41 | A0A3S4NKW3_9MAGN; Ethylene-responsive transcription factor ERF014-like protein | ||||
STRING | POPTR_0002s08610.1 | 2e-40 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3197 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21910.1 | 4e-27 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo20G0019100 |