PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo1G0125800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C2H2 | ||||||||
Protein Properties | Length: 221aa MW: 24402.6 Da PI: 8.6722 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.9 | 4.5e-07 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F+r nL+ H r H Spipo1G0125800 60 FVCEICSKGFPRDQNLQLHRREH 82 89*******************99 PP | |||||||
2 | zf-C2H2 | 14.7 | 9e-05 | 136 | 158 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k + s+ + H r + Spipo1G0125800 136 YECEHCSKKYAVLSDWQAHVRAC 158 99******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 59 | 83 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.54E-8 | 59 | 82 | No hit | No description |
SMART | SM00355 | 0.0048 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.887 | 60 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 100 | 130 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.9E-6 | 127 | 157 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.54E-8 | 131 | 156 | No hit | No description |
SMART | SM00355 | 50 | 136 | 156 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEESGSAGSV EAGGDGGSYG EQEAQKTAAS KRKRNPPGMP DPDAEVVALS PEALMATNRF 60 VCEICSKGFP RDQNLQLHRR EHNLPWNLRG SGDKPRKRVY VCPVSTCVYH SPARALGDLT 120 GIKKHFFRKH GGEKKYECEH CSKKYAVLSD WQAHVRACSG FPVFRRRHKE PDGETGKDSY 180 ELNSATALGC RQLCCSSNSK LWANEVISAM HIRCKCIFDA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019153412.1 | 8e-69 | PREDICTED: protein indeterminate-domain 2-like | ||||
Refseq | XP_019153413.1 | 8e-69 | PREDICTED: protein indeterminate-domain 2-like | ||||
Refseq | XP_019153414.1 | 8e-69 | PREDICTED: protein indeterminate-domain 2-like | ||||
Swissprot | Q9LVQ7 | 2e-66 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A1D1XKK7 | 9e-84 | A0A1D1XKK7_9ARAE; Zinc finger protein MAGPIE | ||||
STRING | XP_010259853.1 | 2e-66 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 2e-66 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo1G0125800 |
Publications ? help Back to Top | |||
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