PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0124800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 334aa    MW: 36782.2 Da    PI: 9.6648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0124800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.7e-09185229655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     n+r r RR+ i +++  L +l+P++     +K++ +++Le+A +Y+k L+
  Spipo1G0124800 185 NMRSRVRRKGISERIRLLAKLMPWD-----RKMNTSTMLEEARNYVKFLE 229
                     8999********************9.....8****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.633179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-10182238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-7185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-7185232No hitNo description
Gene3DG3DSA:4.10.280.101.5E-8185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-6185229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEGTLLPDGI FVSPAFLARM AEGIVPLDAA RTTAFCTGQD RQDWEEGSGG TDQPERVMLK  60
VPKVEQLTAD ADLPVASKVD CATLKRLSPG SHRLPALQSL EPGIDPREKT HSGSRAWGVE  120
HGSAVVESSH KRFRSISAAM PSSAAVSFPS PHPLFSPPRP LPSSSDDQRA LQAERPASRQ  180
LIPPNMRSRV RRKGISERIR LLAKLMPWDR KMNTSTMLEE ARNYVKFLEA QVTVLQCMPV  240
DSRFSCPPPS SYGASASVFR GLERLTRQQL LHVLVRSPLV QDKLCGRGLC VFSVEQVILM  300
RQAAERKKIL HQQQQQIEQQ MILDSGSTST ISD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2498544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.11e-24bHLH family protein