PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G22100.1 | ||||||||
Common Name | BHLH117, EN140, MZN24.31 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 28341.1 Da PI: 6.6349 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.9 | 7.6e-08 | 143 | 180 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R++i +++ L +l+P+ +K++ a++Le+ +YIk Lq AT3G22100.1 143 RRKISDKIRSLEKLMPWE-----RKMNLAMTLEESHKYIKFLQ 180 89***************9.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.947 | 130 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-7 | 142 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-9 | 143 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-5 | 143 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.49E-4 | 143 | 184 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
METPAYDFDS LTDLPPLPPS DFTPSNAFTF PDHNLDFSFL DSTLSLLNRH HLSESTRLEQ 60 IFYDSTHTQL FHNDDTTTTT TPFLHLPDLK SIDAVEEPTT MKLFPSLSPP LPAAKRQKLN 120 STSSSTTSGS PTASNDGGII TKRRKISDKI RSLEKLMPWE RKMNLAMTLE ESHKYIKFLQ 180 SQIASLRWMP LESVYNTAGE VGETDLLKSL TRQQILQVLA NSPGSRNVLS SRGVCVFSYE 240 QLLSLKTMSR NL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18403258 | 0.0 | ||||
Expression Atlas | AT3G22100 | - | ||||
AtGenExpress | AT3G22100 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G22100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G22100 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028622 | 0.0 | AB028622.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MZN24. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_188848.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9LRJ4 | 0.0 | BH117_ARATH; Transcription factor bHLH117 | ||||
TrEMBL | A0A178VFY0 | 0.0 | A0A178VFY0_ARATH; Uncharacterized protein | ||||
STRING | AT3G22100.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13399 | 22 | 28 | Representative plant | OGRP11266 | 5 | 6 |
Link Out ? help Back to Top | |
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Phytozome | AT3G22100.1 |
Entrez Gene | 821772 |
iHOP | AT3G22100 |
wikigenes | AT3G22100 |
Publications ? help Back to Top | |||
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