PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0084300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 244aa    MW: 26303.1 Da    PI: 4.8922
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0084300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-1971120255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr +k +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g
  Spipo1G0084300  71 IYRGVRMRK-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALTIKG 120
                     69*****99.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.74E-3170130No hitNo description
PfamPF008472.6E-1370120IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-2271129IPR016177DNA-binding domain
PROSITE profilePS5103223.16971128IPR001471AP2/ERF domain
SMARTSM003802.6E-3771134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-3371129IPR001471AP2/ERF domain
PRINTSPR003671.1E-107283IPR001471AP2/ERF domain
PRINTSPR003671.1E-1094110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEVEQLAAEC EADTHSTSSS SNCSSFSSSL NSSSPNTSPV SKESSAAEDS KPVATGGSES  60
RKRCRDEKHP IYRGVRMRKW GKWVSEIREP RKKSRIWLGT FATAEMAARA HDVAALTIKG  120
QSACLNFPEL AAVLPRPATV SPKDIQAAAI KAAAATFDAQ REPPADDSSR EESPRSRSSC  180
SPPPTTPSSR DSDNALFDLP DLLFGLDSDG LSYSSLWIPS AGWLGVEDDY DGGFRLDEPL  240
LWY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18681291173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400894.14e-67PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ72e-46ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A426X0V62e-62A0A426X0V6_ENSVE; Uncharacterized protein (Fragment)
STRINGXP_008803818.19e-57(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.11e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]