PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G32800.1 | ||||||||
Common Name | ERF043, T16I18.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 24857.6 Da PI: 4.6209 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.8e-17 | 17 | 67 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+A +a++ a+ +++g AT4G32800.1 17 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAMRAHDVAAMSIKG 67 68*****998.**********843...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.8E-12 | 17 | 67 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-20 | 18 | 75 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-31 | 18 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.603 | 18 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-34 | 18 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-10 | 19 | 30 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.48E-31 | 19 | 77 | No hit | No description |
PRINTS | PR00367 | 5.5E-10 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009046 | anatomy | flower | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MADSSSDKEK KENNKQPVYR GVRMRSWGKW VSEIREPRKK SRIWLGTFPT AEMAMRAHDV 60 AAMSIKGTSA ILNFPELSKL LPRPVSLSPR DVRAAATKAA LMDFDTTAFR SDTETSETTT 120 SNKMSESSES NETVSFSSSS WSSVTSIEES TVSDDLDEIV KLPSLGTSLN ESNEFVIFDS 180 LEDLVYMPRW LSGTEEEVFT YNNNDSSLNY SSVFESWKHF P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 19 | 76 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.31634 | 0.0 | bud| floral meristem| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 253405_at | 0.0 | ||||
Expression Atlas | AT4G32800 | - | ||||
AtGenExpress | AT4G32800 | - | ||||
ATTED-II | AT4G32800 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00467 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G32800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G32800 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161582 | 0.0 | AL161582.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78. | |||
GenBank | AY088918 | 0.0 | AY088918.1 Arabidopsis thaliana clone 99612 mRNA, complete sequence. | |||
GenBank | BT002924 | 0.0 | BT002924.1 Arabidopsis thaliana clone RAFL14-88-G18 (R20108) putative transcription factor TINY (At4g32800) mRNA, complete cds. | |||
GenBank | BT004343 | 0.0 | BT004343.1 Arabidopsis thaliana clone U20108 putative transcription factor TINY (At4g32800) mRNA, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_195006.1 | 1e-159 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9M080 | 1e-160 | ERF43_ARATH; Ethylene-responsive transcription factor ERF043 | ||||
TrEMBL | A0A178UVE6 | 1e-135 | A0A178UVE6_ARATH; Uncharacterized protein | ||||
STRING | AT4G32800.1 | 1e-158 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT4G32800.1 |
Entrez Gene | 829416 |
iHOP | AT4G32800 |
wikigenes | AT4G32800 |