PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0076200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 303aa    MW: 32607.4 Da    PI: 8.1422
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0076200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022174196123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k+F+++  L  H  +H
  Spipo1G0076200 174 FECSICKKVFPSHQALGGHRASH 196
                     89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.7436895IPR007087Zinc finger, C2H2
SMARTSM003550.0626890IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.05E-66990No hitNo description
PfamPF139122.5E-87092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SuperFamilySSF576677.05E-6169196No hitNo description
PfamPF139122.0E-11173197IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.055174201IPR007087Zinc finger, C2H2
SMARTSM003550.015174196IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSDPNPSNAE ALERPVSDSS STVIVDDSPI LSPTERGRRE DLEGADSSGT SRPRPRRKPD  60
PFADEVTPPC SECGRRFWSQ KALFGHMRCH PERQWRGINP PPHLRCPQAA FERPPPPPPL  120
GSLRPPADHS RRHNREHDAA RYLVMLANGR SYADAGTVDA PVAPIPPLHL NCRFECSICK  180
KVFPSHQALG GHRASHKNVK GCFARARVNE GDEPCGTGCG GKDNPTTSSG GDDEKNANLV  240
CRRAFSGGQA LAGQKRCHWD ACGASSTAPR GHVPDLNLPL PPENKENSGS SPDPALDLKL  300
GT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357RPRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619698.11e-62zinc finger protein ZAT3-like
TrEMBLA0A3S3Q3783e-62A0A3S3Q378_9MAGN; Zinc finger protein ZAT3
STRINGcassava4.1_031529m4e-62(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-54C2H2-like zinc finger protein