PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G35280.1
Common NameDAZ2, F23E12.160, ZAT3
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 284aa    MW: 31362.3 Da    PI: 8.9446
Description C2H2-like zinc finger protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G35280.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016162184123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k+F ++  L  H  +H
  AT4G35280.1 162 FECGGCKKVFGSHQALGGHRASH 184
                  89************999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-677101IPR007087Zinc finger, C2H2
PROSITE profilePS501579.41177104IPR007087Zinc finger, C2H2
SMARTSM003550.0357799IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.53E-77899No hitNo description
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SuperFamilySSF576671.53E-7157184No hitNo description
PfamPF139121.1E-7161185IPR007087Zinc finger, C2H2
SMARTSM003553162184IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66162189IPR007087Zinc finger, C2H2
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
SuperFamilySSF576671.5E-5221248No hitNo description
PfamPF139124.8E-11221246IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64222249IPR007087Zinc finger, C2H2
SMARTSM003550.11222244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000035anatomycotyledon vascular system
PO:0000036anatomyleaf vascular system
PO:0000056anatomyflower bud
PO:0000084anatomyplant sperm cell
PO:0003011anatomyroot vascular system
PO:0009015anatomyportion of vascular tissue
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001016developmental stageL mature pollen stage
PO:0001017developmental stageM germinated pollen stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MNNNHSYDDR SFHIPLHPSN TSNPNPNLQF ALSSSYDHSP KKKRTKTVAS SSSSSPKSAS  60
KPKYTKKPDP NAPKITRPCT ECGRKFWSWK ALFGHMRCHP ERQWRGINPP PNYRVPTAAS  120
SKQLNQILPN WVSFMSEEDH EVASCLLMLS NGTPSSSSIE RFECGGCKKV FGSHQALGGH  180
RASHKNVKGC FAITNVTDDP MTVSTSSGHD HQGKILTFSG HHKCNICFRV FSSGQALGGH  240
MRCHWEKEEE PMISGALDLN VPPTIQDLST SDTSGCCLDL RLGL
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible253187_at0.0
Expression AtlasAT4G35280-
AtGenExpressAT4G35280-
ATTED-IIAT4G35280-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the germ cells following microspore division, increases during development and persists into mature pollen. {ECO:0000269|PubMed:24876252}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in pollen. {ECO:0000269|PubMed:24876252}.
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G35280.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G35280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226040.0AL022604.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project).
GenBankAL1615870.0AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195254.10.0C2H2-like zinc finger protein
SwissprotO654990.0ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A178UTT40.0A0A178UTT4_ARATH; DAZ2
STRINGAT4G35280.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Representative plantOGRP13115149
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  3. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  4. Mittler R, et al.
    Gain- and loss-of-function mutations in Zat10 enhance the tolerance of plants to abiotic stress.
    FEBS Lett., 2006. 580(28-29): p. 6537-42
    [PMID:17112521]
  5. Underwood BA,Vanderhaeghen R,Whitford R,Town CD,Hilson P
    Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
    Plant Biotechnol. J., 2006. 4(3): p. 317-24
    [PMID:17147637]
  6. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  7. Borg M, et al.
    The R2R3 MYB transcription factor DUO1 activates a male germline-specific regulon essential for sperm cell differentiation in Arabidopsis.
    Plant Cell, 2011. 23(2): p. 534-49
    [PMID:21285328]
  8. Borg M, et al.
    An EAR-Dependent Regulatory Module Promotes Male Germ Cell Division and Sperm Fertility in Arabidopsis.
    Plant Cell, 2014. 26(5): p. 2098-2113
    [PMID:24876252]