PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0056700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 289aa    MW: 31016.7 Da    PI: 7.5222
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0056700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00066175197123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ C+k+F +++ L  H   H
  Spipo1G0056700 175 FKCSSCDKVFDSPHGLGGHRAGH 197
                     89***********9998887655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.45284111IPR007087Zinc finger, C2H2
SMARTSM003550.007684106IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.83E-985106No hitNo description
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
PfamPF139123.2E-786106IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-486106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.83E-9170197No hitNo description
SuperFamilySSF576674.6E-5173243No hitNo description
PfamPF139126.4E-5174197IPR007087Zinc finger, C2H2
SMARTSM003551.4175197IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162175202IPR007087Zinc finger, C2H2
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
PfamPF139126.1E-4218236IPR007087Zinc finger, C2H2
SMARTSM003550.82218240IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MTLSTNAPRP AATDLPSSAR PSATVSAGAD ERGGVPHRSY HRAEIEQLEA VAQPGSPKPP  60
TVAAPGRRKR MRRSEREEAK KITQPCSECG KRFWSWKALF GHMRCHPNRS WRGIEPPPYV  120
RRRTSPLLPA DLPPGDGQPE EAELEAAYCL ILLTGQQADG DTGHDLPPSS AIKVFKCSSC  180
DKVFDSPHGL GGHRAGHARA MRDVTTRKRK AESSEHLHSC GFCSMSFPSG QALGGHVLVH  240
CDEECEPEKA ASEAGAESSS TAGNGGCGFD LNLPAPEEMM QVKHPNSE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPOPTR_0009s16770.14e-41(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-29C2H2-like zinc finger protein