PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0051000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 381aa    MW: 41263 Da    PI: 9.3628
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0051000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-055072123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ C+k F r  nL+ H r H
  Spipo1G0051000 50 FICEVCKKGFQREQNLQLHRRGH 72
                    89*******************88 PP
2zf-C2H213.20.00026126148123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  Spipo1G0051000 126 WKCDKCSKRYAVQSDWKAHSKTC 148
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.32E-74972No hitNo description
Gene3DG3DSA:3.30.160.602.3E-54972IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.8E-55072IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.6795072IPR007087Zinc finger, C2H2
SMARTSM003550.0125072IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SMARTSM0035515091121IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.8E-5114147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.32E-7121146No hitNo description
SMARTSM00355140126146IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MASSSSSTIF YGVTEADLQN QMKQTPLSSD QPDSEVIALS PKTLLATNRF ICEVCKKGFQ  60
REQNLQLHRR GHNLPWKLRQ KSTTEVKRRV YVCPEPTCVH HDPSRALGDL TGIKKHYCRK  120
HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDVLAQE  180
SADSTRASSD VLRLGGCGGA AQFSHLSSPL DTSSSRQHQP SASSGFFFTG SSQDFLNGKS  240
FHGLMQLPEF HNNTATSPSA VGSAAASLFH LGFFSNTSSS TGSVSNTNNV SNQGNHLLIP  300
DQFSDSNGPR EAPSFFAGNL LGDHVASAMS SLYNTSLQNG GVLPQMSATA LLQKASQMGA  360
TTSGSRPSVQ RGVGSPSSFR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-34122182363Zinc finger protein JACKDAW
5b3h_F5e-34122182363Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270755.11e-162PREDICTED: protein indeterminate-domain 5, chloroplastic-like
RefseqXP_010270757.11e-162PREDICTED: protein indeterminate-domain 5, chloroplastic-like
SwissprotQ8GYC11e-109IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A1D1XPR51e-166A0A1D1XPR5_9ARAE; Zinc finger protein MAGPIE
STRINGXP_010270754.11e-161(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-105indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]