PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo1G0050600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Trihelix

Protein Properties

Length: 372aa MW: 41369.9 Da PI: 9.0792

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo1G0050600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.2	1.8e-17	66	158	2	77
trihelix 2 WtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 Wt +e+ +Li+a+r ++er +rg +++++W++v ++++ +++ rs++qC++kw+nl ++ykk+++ e +r ++sss Spipo1G0050600 66 WTLHETVVLIAAKRLDDERRSRGGateskptvhqnhsqqncrSAEQRWKWVENYCWNHQCFRSQNQCNDKWDNLLRDYKKVRDYEARR-CPSSS 158 ************88888888744566777777888888889*****************************************98.55543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.365	58	140	IPR017877	Myb-like domain
Pfam	PF13837	8.5E-9	65	153	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MSDHPSNANP SAPHRAAAVI LVPERHRNHN PPSSPAGCLP HPGNANAGAA SPNSALLPRE 60 YRKGNWTLHE TVVLIAAKRL DDERRSRGGA TESKPTVHQN HSQQNCRSAE QRWKWVENYC 120 WNHQCFRSQN QCNDKWDNLL RDYKKVRDYE ARRCPSSSSD KPDDKKGSSD DVASSYWTME 180 KHERKERNLP SNLVQEVFEA LTDVLSRRNA NKTSVSNAII LTPRPPPLAV TPAAAHESLQ 240 PIATPAAPPP PPPLQQQEPH RQPSISELSS STEGTDASER EDSDAKRRKV RNLGASVVRG 300 ASVLARALLA CEDRRSKRHR DLLDLEERRL RAEEDRTEMN REGLAGLIAA VNNLAGAVHA 360 LVSDHRNEIS R*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MSDHPSNANP SAPHRAAAVI LVPERHRNHN PPSSPAGCLP HPGNANAGAA SPNSALLPRE  60
YRKGNWTLHE TVVLIAAKRL DDERRSRGGA TESKPTVHQN HSQQNCRSAE QRWKWVENYC  120
WNHQCFRSQN QCNDKWDNLL RDYKKVRDYE ARRCPSSSSD KPDDKKGSSD DVASSYWTME  180
KHERKERNLP SNLVQEVFEA LTDVLSRRNA NKTSVSNAII LTPRPPPLAV TPAAAHESLQ  240
PIATPAAPPP PPPLQQQEPH RQPSISELSS STEGTDASER EDSDAKRRKV RNLGASVVRG  300
ASVLARALLA CEDRRSKRHR DLLDLEERRL RAEEDRTEMN REGLAGLIAA VNNLAGAVHA  360
LVSDHRNEIS R*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB455294	1e-45	AB455294.1 Echinochloa crus-galli var. crus-galli sh4 homologue gene, complete cds, strain: Ec/96-C-016.
GenBank	AB455295	1e-45	AB455295.1 Echinochloa crus-galli var. formosensis sh4 homologue gene, complete cds, strain: Ec/96-C-054.
GenBank	AB455296	1e-45	AB455296.1 Echinochloa crus-galli var. formosensis sh4 homologue gene, complete cds, strain: Ec/99-J-197.
GenBank	AB455297	1e-45	AB455297.1 Echinochloa crus-galli var. praticola sh4 homologue gene, complete cds, strain: Ec/97-J-39.
GenBank	AB455298	1e-45	AB455298.1 Echinochloa oryzoides sh4 homologue gene, complete cds, strain: Ec/95-F-01.
GenBank	AB455299	1e-45	AB455299.1 Echinochloa oryzoides sh4 homologue gene, complete cds, strain: Ec/01-My-09.
GenBank	AB455300	1e-45	AB455300.1 Echinochloa oryzoides sh4 homologue gene, complete cds, strain: Ec/01-My-25.
GenBank	AB455301	1e-45	AB455301.1 Echinochloa esculenta sh4 homologue gene, complete cds, strain: Ec/05-J-05.
GenBank	AB455302	1e-45	AB455302.1 Echinochloa oryzoides sh4 homologue gene, complete cds, strain: Ec/05-J-20.
GenBank	AB455303	1e-45	AB455303.1 Echinochloa esculenta sh4 homologue gene, complete cds, strain: Ec/91-K-04.
GenBank	AB455304	1e-45	AB455304.1 Echinochloa esculenta sh4 homologue gene, complete cds, strain: Ec/97-C-42.
GenBank	AB455323	1e-45	AB455323.1 Echinochloa colona sh4 homologue gene, complete cds, strain: Ec/95-I-01.
GenBank	AB455324	1e-45	AB455324.1 Echinochloa colona sh4 homologue gene, complete cds, strain: Ec/97-Pr-01.
GenBank	AB455325	1e-45	AB455325.1 Echinochloa frumentacea sh4 homologue gene, complete cds, strain: Ec/95-PA-01.
GenBank	AB455326	1e-45	AB455326.1 Echinochloa crus-pavonis sh4 homologue gene, complete cds, strain: Ec/01-Ar-01.
GenBank	AB455327	1e-45	AB455327.1 Echinochloa crus-pavonis sh4 homologue gene, complete cds, strain: Ec/97-Ar-02.
GenBank	AB455328	1e-45	AB455328.1 Echinochloa crus-pavonis sh4 homologue gene, complete cds, strain: Ec/01-Ar-01.
GenBank	AB455329	1e-45	AB455329.1 Echinochloa crus-pavonis sh4 homologue gene, complete cds, strain: Ec/97-Ar-02.
GenBank	AB455330	1e-45	AB455330.1 Echinochloa stagnina sh4 homologue gene, complete cds, strain: Ec/95-T-01.
GenBank	AB467374	1e-45	AB467374.1 Echinochloa esculenta sh4 gene for shattering protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028776686.1	1e-100	trihelix transcription factor ASR3-like
TrEMBL	A0A443PQ37	1e-100	A0A443PQ37_9MAGN; Pollen-specific leucine-rich repeat extensin-like protein 2
STRING	Aquca_002_01378.1	4e-95	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3294	35	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-44	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Spipo1G0050600