PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G35640.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 340aa    MW: 38305.2 Da    PI: 9.0497
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G35640.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix561.1e-1722104275
     trihelix   2 WtkqevlaLiearremeerlrr.gk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                  Wt +e+l+Liea++ +++r  r ++         ++ +W+++ +++++rg+ r+++qC++kw+nl ++ykki+e e++r + s
  AT2G35640.1  22 WTVSETLVLIEAKKMDDQRRVRrSEkqpegrnkPAELRWKWIEEYCWRRGCYRNQNQCNDKWDNLMRDYKKIREYERSRVESS 104
                  *************966655544132444554449999****************************************994333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8881487IPR017877Myb-like domain
PfamPF138372.5E-1421118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MADADPSSGE QIVMRECRKG NWTVSETLVL IEAKKMDDQR RVRRSEKQPE GRNKPAELRW  60
KWIEEYCWRR GCYRNQNQCN DKWDNLMRDY KKIREYERSR VESSFNTVTS SSYWKMDKTE  120
RKEKNLPSNM LPQIYDVLSE LVDRKTLPSS SSAAAAVGNG NGGQILRVCQ QSLGFVAPMM  180
AQPMHQIPTT IVLSLPPPPP QSLSLSLPSP PQPPPSSSFH AEPIPPTVGT SSTKRRRTTP  240
GETTAGGERE VEEDAVGVAL SRCTSVITQV IRENEEGQER RHKEVVRLQE RRLKIEESKT  300
EINRQGMNGL VDAINQLASS ILALASSSCH NNRNHQGGPP
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184039120.0
Expression AtlasAT2G35640-
AtGenExpressAT2G35640-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G35640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G35640
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0060680.0AC006068.4 Arabidopsis thaliana chromosome 2 clone T20F21 map ve016, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181107.10.0Homeodomain-like superfamily protein
TrEMBLQ9ZQN70.0Q9ZQN7_ARATH; Homeodomain-like superfamily protein
STRINGAT2G35640.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Representative plantOGRP18811637
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]