PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0030900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 655aa    MW: 72466.5 Da    PI: 5.0892
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0030900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63e-10460501955
                     HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ErrR +++N+ f  L++llP+ +      K +K++iL  ++eY+k+L+
  Spipo1G0030900 460 ERRRQEKMNKNFLILKSLLPSiN------KIDKSSILGDTIEYLKELE 501
                     9********************77......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-4817195IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088813.503451500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10457506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-13458513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.08E-11459505No hitNo description
Gene3DG3DSA:4.10.280.101.7E-12459512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7460501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MATGHWEEEM KVTAKDLRNG LAAAVQGIQW NYAIFWSASA SPQGLLEWGD GYYNGDIKTR  60
KMTQSLELED DRMGLKRSEQ LRELYISLSA GDSDQLGRRP SALLSPEDLT DSEWFYLVCM  120
SFTFHSGHGL VGRTLATGSH IWLTDAHSAE SRVFTRSLLA KTVFCFPFLN GVLELGTAES  180
VMEDPDLIRQ VTTFFWDSQK ALSAEKAPSG VPISEEDVDR VGHNCDLDML DPLPAGGMLQ  240
FAGPQSQSEN GFQPKPSIKV FELSGEGEDG LQADSSEELE TFSPDRCVDI HTDESAMMDG  300
PDGMSQTHSW QFLDDEPAND CKCPSSSDLQ PAPCAKQERT EYVNGPKACR KVDFSFDAGF  360
DSVHYEKTLS AIFGSSARPR ATLFFPNRSC SSSFVAWRKG SSAVPVTRIG AQKQRLLKKI  420
LFNRLEMRDG RPSPPRKDGR KGGMEKPEGD EFGSSLLSSE RRRQEKMNKN FLILKSLLPS  480
INKIDKSSIL GDTIEYLKEL ERRVEFLESH MDPKDLDVKE LSKLLDVTER TSDNYGRDGV  540
DFDGKKSSIC KRKASDADEQ GFESHWVLSK NGDADVNVTV VGKEVMIQVT CPWRDCLLLE  600
VVDAVSGLHL DAHSVQSSTV DGNLSLTIKS KFRGAMVSSP GMIKGTIHRV VGKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-16171959192Transcription factor MYC3
4rqw_B6e-16171959192Transcription factor MYC3
4rs9_A6e-16171959192Transcription factor MYC3
4yz6_A6e-16171959192Transcription factor MYC3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918535.10.0transcription factor GLABRA 3
TrEMBLA0A1D1Z6E00.0A0A1D1Z6E0_9ARAE; Transcription factor GLABRA 3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-130bHLH family protein