PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo19G0022600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 354aa    MW: 39623.3 Da    PI: 4.9447
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo19G0022600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.88.4e-14263288126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +ktelC+ +++ G C+yG+ C+FaHg
  Spipo19G0022600 263 FKTELCNKWQEAGSCPYGEHCQFAHG 288
                      79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.2E-17260295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-10261294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.882262290IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-8262289IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-11263288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MPLLTPDRHS SSPPRSIDNG GEFANICASL FSPKESTLFP QIQYQTSTPI SITTSSLFCD  60
DDSEEAAVTE HCLGLARLTF QYQEMLGRYE LCLSHLEEAA EEAEALRLEN SNLRMANAEL  120
ARRLTIISPY GQCRSTVGLS EVYPGLPLNL LNDFQLLDLN SSPTTAEWSP IHDCKNDNIL  180
TRRAQVQDHR TTLPKSISIR SKGYMKLAAS SRNGRNRFSD PAMLGPQKVY VPLEENENSS  240
SDGNNQEKEA ATLEFEAYAQ GMFKTELCNK WQEAGSCPYG EHCQFAHGIA ELRPVIRHPR  300
YKTEICRMIL SGLEQSESAQ SLSETYQQPF EFDNLGWLSH VRPGYGWTPT KVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A7e-15263309450Butyrate response factor 2
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924174.15e-80zinc finger CCCH domain-containing protein 9
STRINGXP_008800937.12e-87(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-33C3H family protein