PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G68200.1
Common NameT22E19.17
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 308aa    MW: 34227.2 Da    PI: 8.7083
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G68200.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.33.4e-15224248226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ktelC+ +++tGtC+yGd C+FaHg
  AT1G68200.1 224 KTELCNKWQETGTCPYGDHCQFAHG 248
                  9***********************8 PP
2zf-CCCH19.91.3e-06261286126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykte Cr  +++  C+yG rC+F H+
  AT1G68200.1 261 YKTEVCRMVLAGDNCPYGHRCHFRHS 286
                  9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-18217255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-11219254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23222250IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-9222249IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-12224248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-9256291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-13256289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272260288IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5260287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0009046anatomyflower
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MENKIAPFSY SGSSAGNSSS GGVVSSSLYS DQLYKSTRNI MQQRQDMVNR EALCYTRLHE  60
ASLEAEALRL ENTELRSMNL RLKNELNSLI RSSIQNRFDH RSPLRMLSNL SIGGNDADEV  120
ENQNRTVNRD DVNDKSPTSV MENEDLNRSS LPKSISVRSN GYSKASQGGG GAAAQSGKPR  180
GTVTKPGTCG QVSTTQKVYV RGGGKKEDQE EEIEVEVYNQ GMTKTELCNK WQETGTCPYG  240
DHCQFAHGIK ELRPVIRHPR YKTEVCRMVL AGDNCPYGHR CHFRHSLSEQ EKLVAAGFKP  300
KSSLKLIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A6e-23224289570Butyrate response factor 2
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184089720.0
Genevisible260430_at0.0
Expression AtlasAT1G68200-
AtGenExpressAT1G68200-
ATTED-IIAT1G68200-
Function -- GeneRIF ? help Back to Top
  1. The Arabidopsis thaliana CALLOSE DEFECTIVE MICROSPORE1 (CDM1) gene, encoding a tandem CCCH-type zinc finger protein, plays an important role in regulation of callose metabolism in male meiocytes.[CDM1]
    [PMID: 24567187]
  2. C3H14 and its homologue C3H15 redundantly regulate secondary wall formation and they additionally function in anther development. [C3H15]
    [PMID: 25732536]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G68200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G68200
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0260770.0BT026077.1 Arabidopsis thaliana At1g68200 mRNA, complete cds.
GenBankDQ0565140.0DQ056514.1 Arabidopsis thaliana zinc finger (CCCH-type) family protein (At1g68200) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001319344.10.0Zinc finger C-x8-C-x5-C-x3-H type family protein
RefseqNP_176987.10.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ9C9F50.0C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A178WL360.0A0A178WL36_ARATH; Uncharacterized protein
STRINGAT1G68200.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Representative plantOGRP20581636
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Vandepoele K, et al.
    Genome-wide identification of potential plant E2F target genes.
    Plant Physiol., 2005. 139(1): p. 316-28
    [PMID:16126853]
  3. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  4. Underwood BA,Vanderhaeghen R,Whitford R,Town CD,Hilson P
    Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
    Plant Biotechnol. J., 2006. 4(3): p. 317-24
    [PMID:17147637]
  5. Culligan KM,Robertson CE,Foreman J,Doerner P,Britt AB
    ATR and ATM play both distinct and additive roles in response to ionizing radiation.
    Plant J., 2006. 48(6): p. 947-61
    [PMID:17227549]
  6. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  7. Peiffer JA, et al.
    A spatial dissection of the Arabidopsis floral transcriptome by MPSS.
    BMC Plant Biol., 2008. 8: p. 43
    [PMID:18426585]
  8. Brady SM, et al.
    A stele-enriched gene regulatory network in the Arabidopsis root.
    Mol. Syst. Biol., 2011. 7: p. 459
    [PMID:21245844]
  9. Lu P, et al.
    The Arabidopsis CALLOSE DEFECTIVE MICROSPORE1 gene is required for male fertility through regulating callose metabolism during microsporogenesis.
    Plant Physiol., 2014. 164(4): p. 1893-904
    [PMID:24567187]
  10. Chai G, et al.
    Arabidopsis C3H14 and C3H15 have overlapping roles in the regulation of secondary wall thickening and anther development.
    J. Exp. Bot., 2015. 66(9): p. 2595-609
    [PMID:25732536]