PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo19G0020800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HD-ZIP
Protein Properties Length: 244aa    MW: 26759.5 Da    PI: 9.5428
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo19G0020800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.6e-1879132356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+ ++tkeq + Lee F++n++++ +++e LA +l+L+ rqV vWFqNrRa+ k
  Spipo19G0020800  79 KKLRLTKEQSRLLEESFRQNQTLNPKQKETLAFNLKLKPRQVEVWFQNRRARTK 132
                      67789***********************************************98 PP
2HD-ZIP_I/II119.81.4e-3879166289
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+L+r++ +l+een+rL++eve+Lr+
  Spipo19G0020800  79 KKLRLTKEQSRLLEESFRQNQTLNPKQKETLAFNLKLKPRQVEVWFQNRRARTKLKQTEMECEYLRRCFGSLTEENRRLQREVEQLRS 166
                      9*************************************************************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-1766132IPR009057Homeodomain-like
SuperFamilySSF466897.7E-1968135IPR009057Homeodomain-like
PROSITE profilePS5007117.03874134IPR001356Homeobox domain
SMARTSM003891.4E-1476138IPR001356Homeobox domain
CDDcd000861.26E-1577135No hitNo description
PfamPF000462.5E-1578132IPR001356Homeobox domain
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
SMARTSM003404.1E-21134177IPR003106Leucine zipper, homeobox-associated
PfamPF021834.9E-9134167IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAVPGLISPS GSSNLGSNRM AMGLRVSGSD MRRCGADGGG CCNMRDLDIN QPPSGVEEEF  60
LMGAVDDDDD ATAAAHRPKK LRLTKEQSRL LEESFRQNQT LNPKQKETLA FNLKLKPRQV  120
EVWFQNRRAR TKLKQTEMEC EYLRRCFGSL TEENRRLQRE VEQLRSLRVA PPTVLSPHTR  180
EPMLASALTM CPRCERVTTS GGATTPIAAT AGGAASEAHA RRPGLPGSFT RDPKHLRQPS  240
AAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126134RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924194.12e-89LOW QUALITY PROTEIN: homeobox-leucine zipper protein HOX3
SwissprotQ0JKX12e-86HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH382e-86HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A1D1ZKD31e-101A0A1D1ZKD3_9ARAE; Homeobox-leucine zipper protein HOX3
STRINGLPERR01G20820.13e-88(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.12e-58homeobox-leucine zipper protein 17