PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo19G0011300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bZIP
Protein Properties Length: 154aa    MW: 17168.2 Da    PI: 9.7613
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo19G0011300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1408.7e-133391563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                     ++ +r+ +NRe+ArrsR+RK+  ++ L+  v +L +eN +     + ++++  + +se+
  Spipo19G0011300 33 RKKKRMLSNRESARRSRLRKQRHLDDLAAQVSQLRKENNQILTSYNVITQQLLAIDSEN 91
                     6889**********************************999888888777777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.3E-142993IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.2E-930108No hitNo description
PROSITE profilePS5021710.7143194IPR004827Basic-leucine zipper domain
PfamPF001705.6E-103374IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-123385No hitNo description
CDDcd147021.79E-183484No hitNo description
PROSITE patternPS0003603651IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MASPSGSGAS SGYTLPTTNS GSDEDHQQAL NQRKKKRMLS NRESARRSRL RKQRHLDDLA  60
AQVSQLRKEN NQILTSYNVI TQQLLAIDSE NSVLRTQTME LSHRLQSLNE ILLHMNGLVA  120
ADHPSQNLDG FFVNPWSSIS LNHPIMASPD MFQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14551RRSRLRK
24552RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275578.23e-53PREDICTED: bZIP transcription factor 11-like
SwissprotC0Z2L51e-35BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A1D1XG526e-52A0A1D1XG52_9ARAE; Ocs element-binding factor 1 (Fragment)
STRINGXP_010275577.11e-52(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44593367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.12e-37G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]