PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo18G0011000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 315aa    MW: 33517.4 Da    PI: 5.3913
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo18G0011000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.81.6e-26117176258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      dDg++WrKYGqKe+  ++fpr+YYrC+++   gCp++k+v+rs++d+ +++++Y+g H +
  Spipo18G0011000 117 DDGFSWRKYGQKEILAAKFPRAYYRCSHHrtrGCPARKQVQRSDTDELLFDVVYHGFHSC 176
                      8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.815111179IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-26111177IPR003657WRKY domain
SuperFamilySSF1182907.72E-24115178IPR003657WRKY domain
SMARTSM007749.5E-37116178IPR003657WRKY domain
PfamPF031064.2E-25117176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MENGGTALSR ERLIGELNQG IQLTRVLETH LDYASPVELQ RLLVRSLLST LARAVSIAMA  60
SPEFPPPPPP GSSPRPTDES RAGDVHGRAS KKRKTPEPEC TQWMRVSSAA GVEAPADDGF  120
SWRKYGQKEI LAAKFPRAYY RCSHHRTRGC PARKQVQRSD TDELLFDVVY HGFHSCGVQG  180
QTAAAGAEGN NPQTGQRNEP LILNFRTGLA TKPEEADGGD AELPPPPLFP HLSGHDDLLV  240
SPQAPAAASG EPGGAASPSA VAGPSGSGQL GVDPDFPVLE MDFGEFFSAA MDLDFMAGDV  300
DSKQSLSSAP RFFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-17117176968OsWRKY45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.19e-32WRKY DNA-binding protein 30