PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo18G0000200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 269aa    MW: 29813 Da    PI: 9.8153
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo18G0000200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     ++rWT+eE+e l d+v ++G g W++I +          R+  ++k++w++
  Spipo18G0000200  5 KQRWTPEEEEALWDGVLKHGAGKWRLILQDPEfgrrlFSRSNVDLKDKWRN 55
                     79****************************9999*9989***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.829161IPR017930Myb domain
SuperFamilySSF466892.44E-16258IPR009057Homeodomain-like
SMARTSM007172.3E-6459IPR001005SANT/Myb domain
PfamPF002491.0E-8555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-13557IPR009057Homeodomain-like
CDDcd116603.49E-21657No hitNo description
SMARTSM005263.9E-1095173IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.2E-13109180IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150418.749110178IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.14E-12112180IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.3E-8115173IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGVPKQRWTP EEEEALWDGV LKHGAGKWRL ILQDPEFGRR LFSRSNVDLK DKWRNMCGSY  60
GSQEKGKAPR LKSVPAAPVT RPCTLSSAPS EQDGRPPAPD YSENVQEAKT PAEFTTMITV  120
ALSNLREPHG SEINAIRRYI EQNHNVPPNF RRLLGSKLKL LAAQGKIEKV KRGYRLKQAS  180
TSFETRTPIA KLRGPANCPR RPEAPVRDGD VALPAGPTMT DVAHIIAEAE TKSFLASTAA  240
EEVERIFRLA EESDSLLMLA SEVHKEKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910098.14e-84single myb histone 4
TrEMBLA0A1D1XXA37e-85A0A1D1XXA3_9ARAE; Histone H1
TrEMBLA0A1D1ZC554e-85A0A1D1ZC55_9ARAE; Histone H1
STRINGGSMUA_Achr4P08670_0012e-82(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-49MYB_related family protein