PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G17520.1 | ||||||||
Common Name | F1L3.23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 296aa MW: 32784.2 Da PI: 9.5637 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.9 | 4.8e-13 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l+ +v+++G+g Wk I r R+ ++k++w+++ AT1G17520.1 5 KLKWTAEEEEALLAGVRKHGPGKWKNILRDPElaeqlSSRSNIDLKDKWRNL 56 689**********************************9************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.717 | 1 | 62 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.19E-14 | 7 | 59 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.64E-20 | 7 | 56 | No hit | No description |
Pfam | PF13921 | 5.6E-9 | 8 | 58 | No hit | No description |
SuperFamily | SSF46785 | 1.9E-14 | 123 | 207 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 2.5E-18 | 124 | 189 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 5.9E-12 | 124 | 188 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 22.954 | 126 | 200 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 2.2E-10 | 128 | 198 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000784 | Cellular Component | nuclear chromosome, telomeric region | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGNQKLKWTA EEEEALLAGV RKHGPGKWKN ILRDPELAEQ LSSRSNIDLK DKWRNLSVAP 60 GIQGSKDKIR TPKIKAAAFH LAAAAAAAIV TPTHSGHSSP VATLPRSGSS DLSIDDSFNI 120 VVDPKNAPRY DGMIFEALSN LTDANGSDVS AIFNFIEQRQ EVPPNFRRML SSRLRRLAAQ 180 GKLEKVSHLK STQNFYKMND NSLVQRTPHV ARPKESNTKS RQQTNSQGPS ISQQIVEASI 240 TAAYKLVEVE NKLDVSKGAA EEIERLMKLA EEADEMLVIA REMHEECSQG KIMYLN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.41830 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145335830 | 0.0 | ||||
Genevisible | 260732_at | 0.0 | ||||
Expression Atlas | AT1G17520 | - | ||||
AtGenExpress | AT1G17520 | - | ||||
ATTED-II | AT1G17520 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G17520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | auxin, ethylene, jasmonic acid, salicylic acid |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G17520 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118533 | 0.0 | AK118533.1 Arabidopsis thaliana At1g17520 mRNA for putative myb-related DNA-binding protein, complete cds, clone: RAFL19-76-F04. | |||
GenBank | AY519538 | 0.0 | AY519538.1 Arabidopsis thaliana MYB transcription factor (At1g17520) mRNA, complete cds. | |||
GenBank | BT005290 | 0.0 | BT005290.1 Arabidopsis thaliana At1g17520 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_173195.2 | 0.0 | Homeodomain-like/winged-helix DNA-binding family protein | ||||
Swissprot | F4I7L1 | 0.0 | TRB4_ARATH; Telomere repeat-binding factor 4 | ||||
TrEMBL | A0A178WGH1 | 0.0 | A0A178WGH1_ARATH; Uncharacterized protein | ||||
STRING | AT1G17520.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2321 | 28 | 75 | Representative plant | OGRP855 | 16 | 59 |
Link Out ? help Back to Top | |
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Phytozome | AT1G17520.1 |
Entrez Gene | 838326 |
iHOP | AT1G17520 |
wikigenes | AT1G17520 |