PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo17G0036700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 570aa    MW: 59903.4 Da    PI: 8.4438
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo17G0036700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-053557123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C+ C+k F r  nL+ H r H
  Spipo17G0036700 35 FICEVCNKGFQREQNLQLHRRGH 57
                     89*******************88 PP
2zf-C2H213.20.00027111133123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k++  +s+ k H +t+
  Spipo17G0036700 111 WKCEKCSKRYAVQSDWKAHSKTC 133
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.3E-63457IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-73457No hitNo description
PfamPF121712.8E-53557IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.993557IPR007087Zinc finger, C2H2
SMARTSM003550.00523557IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
SMARTSM0035512076106IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.7E-699132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-7106131No hitNo description
SMARTSM00355130111131IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
IIPNQLRTHA KESSTDPDAE VIALSPKTLM ATNRFICEVC NKGFQREQNL QLHRRGHNLP  60
WKLRQKSTKE VKKRVYLCPE PTCVHHDPSR ALGDLTGIKK HYLRKHGEKK WKCEKCSKRY  120
AVQSDWKAHS KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAQESARIP SGLNTMGSHL  180
YGGGNVGLGI SQVNSQISSL QDQNHLASAD LLRLGGGAAA AGAPQFDHLM SSSNPSPFRP  240
PQAGSSSSFF LSGGASQDFQ ESSQAHHSLL QNKPFHGLMQ LPDLHSNTTA PSSSMAAAAA  300
AANLFNLGFF TSGNNTSSIN NSNNGNNPNG HLLFSDNFGN GSGAGESANL FPGNMMGNHL  360
DSGVPSLYNT SVQQEAALPH MSATALLQKA AQMGATTSGN GSPLLRGFGS SSSSSSAKPT  420
GFKPNFGGGG GENMRTHVEN EAHLQNLMNS LANGGGGVFG GGTGGVAAAA AVAFGGNCTG  480
EGHDEDGGFG GFNPSLCSLD ESKLHNNLSM GSIGGSDRLT RDFLGVGSVV RSMGSGMSQR  540
EQHHGLDISS LDSELKSASA SRPYPGGNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35107171367Zinc finger protein JACKDAW
5b3h_F3e-35107171367Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270755.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
RefseqXP_010270757.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A1D1Z4850.0A0A1D1Z485_9ARAE; Zinc finger protein MAGPIE
STRINGXP_010270754.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-109indeterminate(ID)-domain 5