PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo17G0023400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | bHLH | ||||||||
Protein Properties | Length: 197aa MW: 21773.8 Da PI: 10.3682 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.5e-13 | 137 | 188 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N+ + Lr+l+P++ ++ + a+i+ A++++k+L+ Spipo17G0023400 137 QRMTHIAVERNRRRLMNDHLTSLRSLMPPS---FVQRGDQASIVGGAIDFVKELE 188 79***************************9...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.5E-13 | 135 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.08E-12 | 135 | 192 | No hit | No description |
PROSITE profile | PS50888 | 14.939 | 136 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-14 | 136 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-10 | 137 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-10 | 142 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MASHHHLQMP FLHMLLEEQD RRAAPPEPGA FQLLLRLQEE RLRRLPVHHP PPPPPWGGEE 60 WPAGAEPWCR ELDSCVTHTS ESMSKQEPSG TAAAAAAKTV ATGGAAAAGK REGAAAAKRK 120 RKRLRRTARN VEEVESQRMT HIAVERNRRR LMNDHLTSLR SLMPPSFVQR GDQASIVGGA 180 IDFVKELEQL LQSLQG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 125 | KRKRKRLRR |
2 | 137 | 148 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021767229.1 | 8e-42 | transcription factor bHLH57-like isoform X2 | ||||
Refseq | XP_021767230.1 | 8e-42 | transcription factor bHLH57-like isoform X2 | ||||
TrEMBL | A0A1D1YAK5 | 4e-46 | A0A1D1YAK5_9ARAE; Transcription factor bHLH57 (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01460.1 | 1e-34 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo17G0023400 |