PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo16G0039300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | TCP | ||||||||
Protein Properties | Length: 179aa MW: 18814.8 Da PI: 8.754 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.1 | 1.5e-34 | 58 | 130 | 6 | 77 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaes 77 ++++++hTkv+gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg++ +a ++ ++ s Spipo16G0039300 58 STSKDRHTKVNGRGRRVRMPAMTAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSGVAPAAATtTTCS 130 578*********************************************************8888844422222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.1E-29 | 59 | 133 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.69 | 60 | 114 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MDSQLALYSS SAATTTAAAT GGAAASAAES PAPALFHPQR PRPSTGAGAG RRLSISSSTS 60 KDRHTKVNGR GRRVRMPAMT AARIFQLTRE LGHRSDGETI EWLLRQAEPS IIAATGSGVA 120 PAAATTTTCS DSSPPPGGGA FHRVPYYTSM LMCPPAGDDE QGDQQEPRWA EEQQRRPPE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581062.1 | 6e-39 | transcription factor PCF1 | ||||
Swissprot | O23875 | 8e-38 | PCF1_ORYSJ; Transcription factor PCF1 | ||||
TrEMBL | A0A0E0KN28 | 6e-39 | A0A0E0KN28_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G03490.1 | 1e-39 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14172 | 26 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 8e-28 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo16G0039300 |