PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo16G0020500

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

bHLH

Protein Properties

Length: 290aa MW: 31252.9 Da PI: 6.9285

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo16G0020500	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	2.9e-09	4	53	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l ++ +K++Ka+iL +++ +k+L Spipo16G0020500 4 RKVQKADREKLRRDRLNEQFLELGNALDPD----RPKNDKATILADTIQMLKDL 53 5677889******************997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	7.8E-13	3	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.913	3	53	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-7	4	53	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.18E-7	4	57	No hit	No description
SuperFamily	SSF47459	1.07E-13	4	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.5E-7	9	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MAARKVQKAD REKLRRDRLN EQFLELGNAL DPDRPKNDKA TILADTIQML KDLMAQVNKL 60 KSEYEALSEE SSELTQEKNE LREEKATIKS ELDVLSAQYQ QRLRVVFPWA AMDASVVMGP 120 PQPYPFPMPV PIPSGPMPMH PSLQPYPFFH GQTHGSLPSP FMPYPNPCSQ HAEQPSVALR 180 PGSNKSPGSG KNDPASKLPD RQCRSGAEKG DSFSDVATEL ELKTPGSALP ACSKSPSRGQ 240 DAKAKKGEAW QSQRKSGGAA GAASSSSRCS SSVQDSSSSN GDDGSVAED*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010920215.1	1e-110	transcription factor bHLH121
Swissprot	Q9LT23	2e-69	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A1D1YM52	1e-112	A0A1D1YM52_9ARAE; Transcription factor bHLH121 (Fragment)
STRING	XP_008788362.1	1e-108	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11767	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	3e-51	bHLH family protein

Link Out ? help Back to Top
Phytozome	Spipo16G0020500

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]