PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G19860.1 | ||||||||
Common Name | bHLH121, EN138, MPN9.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 284aa MW: 31867.7 Da PI: 8.4457 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.5 | 5.7e-09 | 7 | 55 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + rE+ RR+++N+ f eL +l + +K++Ka+iL+ +v+ +k+L AT3G19860.1 7 KSQKAGREKLRREKLNEHFVELGNVLDPE----RPKNDKATILTDTVQLLKEL 55 5566779******************9987....69***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.268 | 5 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-12 | 5 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-13 | 5 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.86E-6 | 6 | 59 | No hit | No description |
Pfam | PF00010 | 9.1E-7 | 7 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-6 | 11 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MDVSARKSQK AGREKLRREK LNEHFVELGN VLDPERPKND KATILTDTVQ LLKELTSEVN 60 KLKSEYTALT DESRELTQEK NDLREEKTSL KSDIENLNLQ YQQRLRSMSP WGAAMDHTVM 120 MAPPPSFPYP MPIAMPPGSI PMHPSMPSYT YFGNQNPSMI PAPCPTYMPY MPPNTVVEQQ 180 SVHIPQNPGN RSREPRAKVS RESRSEKAED SNEVATQLEL KTPGSTSDKD TLQRPEKTKR 240 CKRNNNNNSI EESSHSSKCS SSPSVRDHSS SSSVAGGQKP DDAK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.20167 | 0.0 | bud| flower| leaf| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 186510253 | 0.0 | ||||
Genevisible | 257990_at | 0.0 | ||||
Expression Atlas | AT3G19860 | - | ||||
AtGenExpress | AT3G19860 | - | ||||
ATTED-II | AT3G19860 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G19860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q9LT23 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G19860 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK317507 | 0.0 | AK317507.1 Arabidopsis thaliana AT3G19860 mRNA, complete cds, clone: RAFL25-09-J11. | |||
GenBank | AY065107 | 0.0 | AY065107.1 Arabidopsis thaliana unknown protein (At3g19860; MPN9.10) mRNA, complete cds. | |||
GenBank | AY081703 | 0.0 | AY081703.1 Arabidopsis thaliana unknown protein (At3g19860) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_188620.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9LT23 | 0.0 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A1I9LN90 | 0.0 | A0A1I9LN90_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | ||||
STRING | AT3G19860.2 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT3G19860.1 |
Entrez Gene | 821523 |
iHOP | AT3G19860 |
wikigenes | AT3G19860 |