PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo16G0004700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C2H2 | ||||||||
Protein Properties | Length: 335aa MW: 35741.1 Da PI: 10.46 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00037 | 114 | 135 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ Cg++F ++ L++H + H Spipo16G0004700 114 CGVCGRRFYNRVKLVNHFKQiH 135 *****************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.928 | 112 | 140 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 114 | 135 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF01936 | 9.7E-5 | 188 | 276 | IPR021139 | NYN domain, limkain-b1-type |
CDD | cd06167 | 3.47E-8 | 188 | 271 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MGAVAGFSAA LRCLLSRRRL LGDIGGAGVS CCSVARASLP PVAVFWDLDN KPPKGIPPYE 60 AAVRLKLAAS RFGPVRLAVA YADHHAFRRP PPPAGAPRGG EASGAVVPAE PHLCGVCGRR 120 FYNRVKLVNH FKQIHETENA KRLAQLDSAK GGRRVRLAAK LTVKMEKFRR AAREVLVPKM 180 NLGDGGGLAE ELRRAGVSVR RMPDRAEAAE RGALRAHMLA AMEQRKALGC LMLVSDDSGL 240 AGVLSEARTR GLKTVVVGDE GGEGALKRIA DVGFTWQEVA SGKAGKEAAT VIGRWKDRDL 300 LSRLEWTYRP QKEEGEEEGG GGGKREGDSL ETGD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008793801.1 | 1e-110 | uncharacterized protein LOC103710014 | ||||
TrEMBL | A0A2H3Y5P7 | 1e-108 | A0A2H3Y5P7_PHODC; uncharacterized protein LOC103710014 | ||||
STRING | XP_008793801.1 | 1e-109 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12234 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 2e-94 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo16G0004700 |