PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G12240.1
Common NameT4C9.80
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 364aa    MW: 41908.9 Da    PI: 9.4248
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G12240.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013117140123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  y C+ C+++F +++ L +H +  H
  AT4G12240.1 117 YFCGVCDRRFYTNEKLINHFKQiH 140
                  78*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.6E-639117IPR029060PIN domain-like
SuperFamilySSF576677.21E-5116142No hitNo description
PROSITE profilePS5015710.866117145IPR007087Zinc finger, C2H2
PROSITE patternPS000280119140IPR007087Zinc finger, C2H2
CDDcd061671.84E-14134269No hitNo description
PfamPF019364.2E-8187270IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.6E-6202272IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MFSRFVLKSW RPKTQTTSLN SIKGFSFSSS SINPKPKIRV GVWWDLDNKP PASFPPYDAA  60
VKLRTAASSF GTVKLMMAYA NRHAFSYVPL EVREQRKDRK LLNKLENKGL VKPPEPYFCG  120
VCDRRFYTNE KLINHFKQIH ETENQKRMRQ IESSKGHRRV RLVAKYSMKI EKYKRAARNV  180
LTPKEGYGLA DELKRAGFWV KMVSDKPDAA DKALKEHLVE VMDKREVECV VLVSDDSDFA  240
GILWEAKERC LRTVVIGDSN EGALKRVADV AYSWKEVTMG KAKKEVEKVV GKWKDRDVLK  300
KLEWTYDPAL EKERGGSCGV WDYEFDYDDE IENGTEVEPV EIGDGVDWWK IDTEDGVGSS  360
RTCR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.665890.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453401320.0
Genevisible254867_at0.0
Expression AtlasAT4G12240-
AtGenExpressAT4G12240-
ATTED-IIAT4G12240-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G12240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G12240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1189360.0AK118936.1 Arabidopsis thaliana At4g12240 mRNA for unknown protein, complete cds, clone: RAFL21-27-H22.
GenBankAL0803180.0AL080318.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T4C9 (ESSA project).
GenBankAL1615330.0AL161533.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 33.
GenBankBT0054090.0BT005409.1 Arabidopsis thaliana clone U51152 unknown protein (At4g12240) mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192961.10.0zinc finger (C2H2 type) family protein
TrEMBLA0A178V1A80.0A0A178V1A8_ARATH; Uncharacterized protein
TrEMBLQ9STI70.0Q9STI7_ARATH; Zinc finger (C2H2 type) family protein
STRINGAT4G12240.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Representative plantOGRP30481420
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  3. Heazlewood JL, et al.
    Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins.
    Plant Cell, 2004. 16(1): p. 241-56
    [PMID:14671022]