PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo15G0044400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NF-YA | ||||||||
Protein Properties | Length: 228aa MW: 24908.2 Da PI: 9.4484 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103 | 2.7e-32 | 86 | 142 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p++VNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh hA++R RgsgGrF Spipo15G0044400 86 DGPIFVNAKQYHAILRRRQLRAKLEAKNKL-VKGRKPYLHESRHLHAMKRVRGSGGRF 142 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 6.9E-36 | 84 | 145 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.042 | 85 | 145 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.1E-24 | 88 | 110 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.3E-27 | 88 | 142 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 90 | 110 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 5.1E-24 | 119 | 142 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009785 | Biological Process | blue light signaling pathway | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MMQSVPLGED NCNSDKVEDH IKSAMLLGTS EVYPVQKTDS FQSVVDIHPM HVCGSILWKW 60 HGWLWATFTG VSAPSRVPLP NELSEDGPIF VNAKQYHAIL RRRQLRAKLE AKNKLVKGRK 120 PYLHESRHLH AMKRVRGSGG RFLKTKQQEQ QAQQQQHAIA AAAAAAAAAT DSEVSSSPLL 180 QLGEKPGSSG SSGAELTGDS NQDAFLPPEP FGFPAEYTSQ QRVSAIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 7e-21 | 88 | 149 | 4 | 65 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269|PubMed:17322342}. | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010917240.1 | 2e-42 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_029119417.1 | 2e-42 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_029119418.1 | 2e-42 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_029119419.1 | 2e-42 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_029119420.1 | 2e-42 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_029119421.1 | 2e-42 | nuclear transcription factor Y subunit A-4 isoform X1 | ||||
Refseq | XP_029119422.1 | 1e-42 | nuclear transcription factor Y subunit A-3 isoform X2 | ||||
Swissprot | Q93ZH2 | 6e-36 | NFYA3_ARATH; Nuclear transcription factor Y subunit A-3 | ||||
Swissprot | Q9SYH4 | 5e-36 | NFYA5_ARATH; Nuclear transcription factor Y subunit A-5 | ||||
TrEMBL | A0A1D1XF43 | 6e-60 | A0A1D1XF43_9ARAE; Nuclear transcription factor Y subunit A-3 | ||||
STRING | OB03G15670.1 | 3e-40 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1373 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 5e-38 | nuclear factor Y, subunit A5 |
Link Out ? help Back to Top | |
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Phytozome | Spipo15G0044400 |