PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo15G0039600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | bZIP | ||||||||
Protein Properties | Length: 247aa MW: 26171.5 Da PI: 9.8084 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 67.7 | 1.9e-21 | 178 | 240 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+e kr+rrkq+NRe+ArrsR+RK+ae +eL+ +v +L+ eN L++el +++ e++kl se+ Spipo15G0039600 178 EREMKRQRRKQSNRESARRSRLRKQAEYDELAHRVGSLTDENNGLREELARIRSECEKLASEN 240 799*********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16596 | 6.7E-29 | 15 | 148 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.2E-18 | 172 | 237 | No hit | No description |
SMART | SM00338 | 1.6E-19 | 178 | 242 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.5E-19 | 178 | 240 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.909 | 180 | 243 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.75E-12 | 181 | 237 | No hit | No description |
CDD | cd14702 | 2.38E-17 | 183 | 233 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 185 | 200 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
VGAAEGDGKS VEVKERTPVK QTGGSLGSLN MITGKSVERD KASGASTNGV ESESDESGSE 60 ASSEGSDANS QSGSQENRSR KKNTAGGESK NTGTSGSESS KTNRKTQAHA SNHVSPIMAI 120 PSSAITAPTT TLNIGMDYWG GPSTAVTPLR SKLPITPSPA AGAPARSAAP QEIWSQDERE 180 MKRQRRKQSN RESARRSRLR KQAEYDELAH RVGSLTDENN GLREELARIR SECEKLASEN 240 ASLSVSR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 194 | 200 | RRSRLRK |
2 | 194 | 201 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021808666.1 | 2e-73 | bZIP transcription factor 16-like | ||||
Refseq | XP_021808736.1 | 2e-73 | bZIP transcription factor 16-like | ||||
Refseq | XP_021808813.1 | 2e-73 | bZIP transcription factor 16-like | ||||
Swissprot | Q501B2 | 3e-64 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | A0A1D1XP28 | 1e-106 | A0A1D1XP28_9ARAE; G-box-binding factor 1 | ||||
STRING | XP_008238155.1 | 6e-72 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2147 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 6e-55 | basic region/leucine zipper transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Spipo15G0039600 |
Publications ? help Back to Top | |||
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