PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo15G0029700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 267aa MW: 29198.3 Da PI: 10.6548 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 140 | 1.9e-43 | 11 | 155 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 + +kdrhski T++g+RdRR+Rls+++a++fFdLqd+LGfdk+skt++WLl++a +ikel++ ss++++++ ++ess s+ + ++ Spipo15G0029700 11 PQRKDRHSKIFTARGPRDRRMRLSLDVARKFFDLQDMLGFDKASKTVDWLLTNATSSIKELVSCSSPPPHAAgKSESSTSECE--VIStstpll 102 579*************************************************************9999966642222222222..222445688 PP TCP 89 ........kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 ++++ s +++++ a++ l++esr arararertrekm k Spipo15G0029700 103 pvaavenlTLQPAKGMSLRRSRKGATHPMLSRESRLLARARARERTREKMGRK 155 89999888555555566666666677899*********************766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.4E-43 | 12 | 153 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.789 | 13 | 71 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.53 | 134 | 151 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 267 aa Download sequence Send to blast |
MKALGTGRRR PQRKDRHSKI FTARGPRDRR MRLSLDVARK FFDLQDMLGF DKASKTVDWL 60 LTNATSSIKE LVSCSSPPPH AAGKSESSTS ECEVISTSTP LLPVAAVENL TLQPAKGMSL 120 RRSRKGATHP MLSRESRLLA RARARERTRE KMGRKGTEVG QRKLAAEEEI GGGHRGKSSL 180 ELMAEEGDGQ PSSRSTEQHH KDSGESLPLV IPSASGPVSV FDYNHTIISE AIGLVQEHWS 240 MQSSVRVLGK CSKRYTVCVE ALGIPV* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Swissprot | Q8LN68 | 1e-26 | TB1_ORYSJ; Transcription factor TB1 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-27 | TCP domain protein 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo15G0029700 |