PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo15G0022300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 125aa    MW: 13320.9 Da    PI: 11.1763
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo15G0022300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.5e-192675255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGVr ++ +g+Wv+eIr+p     +  +r++lg++ t+e Aa+a++aa ++++g
  Spipo15G0022300 26 RYKGVRMRS-WGSWVSEIRVP-----NhkTRIWLGSYSTPEAAARAYDAALLCIKG 75
                     7*****998.**********9.....335***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-192684IPR016177DNA-binding domain
PROSITE profilePS5103221.3642683IPR001471AP2/ERF domain
PfamPF008471.5E-112675IPR001471AP2/ERF domain
SMARTSM003802.2E-332689IPR001471AP2/ERF domain
CDDcd000183.02E-192685No hitNo description
Gene3DG3DSA:3.30.730.101.2E-292684IPR001471AP2/ERF domain
PRINTSPR003676.6E-92738IPR001471AP2/ERF domain
PRINTSPR003676.6E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
VGASGSGDEA TISSTRPPRE SNRMRRYKGV RMRSWGSWVS EIRVPNHKTR IWLGSYSTPE  60
AAARAYDAAL LCIKGSSASF NFPAAQSHHI SSGAALMSPK SIQRVAAAAA NASHGNSGSY  120
HVFSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1426931480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006386376.16e-39ethylene-responsive transcription factor ERF014
RefseqXP_017421238.19e-39PREDICTED: ethylene-responsive transcription factor ERF014
SwissprotQ9SFE42e-38ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A0L9UFU82e-37A0A0L9UFU8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RDC72e-37A0A0S3RDC7_PHAAN; Uncharacterized protein
TrEMBLA9PLA61e-37A9PLA6_POPTR; RAP2-like protein
STRINGPOPTR_0002s08610.12e-38(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.13e-30ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]