PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo15G0019800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ERF | ||||||||
Protein Properties | Length: 125aa MW: 12897.6 Da PI: 6.4871 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.1 | 1.5e-15 | 65 | 107 | 9 | 55 |
AP2 9 dkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++ +g+W+AeIrdp+ r r++lg+f+tae Aa+a++ a+ ++g Spipo15G0019800 65 RP-WGKWAAEIRDPR----RaVRVWLGTFDTAEAAARAYDVAAITFRG 107 45.**********82....48**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.773 | 55 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 59 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-19 | 64 | 116 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-26 | 64 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.02E-17 | 65 | 115 | No hit | No description |
Pfam | PF00847 | 1.7E-9 | 65 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-26 | 65 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-6 | 81 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MVSALIHVLS GLGSHEQVPV ATAFACAPPD SGGCQFCRIE GCLGCDFFAA GDSGEPTGAG 60 APAARPWGKW AAEIRDPRRA VRVWLGTFDT AEAAARAYDV AAITFRGARA KLNFPFTAET 120 PLSA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-18 | 65 | 115 | 21 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120527 | 2e-35 | AC120527.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence. | |||
GenBank | AC147812 | 2e-35 | AC147812.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence. | |||
GenBank | AP014967 | 2e-35 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 2e-35 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021896704.1 | 1e-35 | ethylene-responsive transcription factor ERF109-like | ||||
Refseq | XP_028550689.1 | 8e-36 | ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 4e-25 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A2R6RH47 | 5e-36 | A0A2R6RH47_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | evm.model.supercontig_62.11 | 4e-35 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-25 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Spipo15G0019800 |
Publications ? help Back to Top | |||
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