PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo15G0012100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family CAMTA
Protein Properties Length: 824aa    MW: 93249.6 Da    PI: 6.8232
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo15G0012100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.63.1e-55291452118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ ++rwl++ ei++iL n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkd ktv+E+hekLK g+++vl+cyYah+e+n++fq
  Spipo15G0012100  29 LEAQSRWLRPAEICEILRNYKSFHIAPEPPNRPTSGSLFLFDRKVLRYFRKDGHNWRKKKDNKTVKEAHEKLKDGSIDVLHCYYAHGEDNEKFQ 122
                      5679****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+yw+Leee+++ivlvhy+ev+
  Spipo15G0012100 123 RRTYWMLEEEYTHIVLVHYREVQ 145
                      ********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.48424150IPR005559CG-1 DNA-binding domain
SMARTSM010763.3E-7527145IPR005559CG-1 DNA-binding domain
PfamPF038591.7E-4830143IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.7E-5245332IPR013783Immunoglobulin-like fold
SuperFamilySSF812965.77E-17246332IPR014756Immunoglobulin E-set
PfamPF018332.1E-5246331IPR002909IPT domain
PROSITE profilePS5029717.529414552IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.64E-15427542IPR020683Ankyrin repeat-containing domain
CDDcd002045.11E-13428540No hitNo description
Gene3DG3DSA:1.25.40.207.4E-16434544IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.03481513IPR002110Ankyrin repeat
SMARTSM002480.082481510IPR002110Ankyrin repeat
SMARTSM00248160520549IPR002110Ankyrin repeat
SMARTSM000151649671IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.92E-8652700IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.151652679IPR000048IQ motif, EF-hand binding site
PfamPF006120.0015652670IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0049672694IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.523673697IPR000048IQ motif, EF-hand binding site
PfamPF006128.8E-5676694IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MAILRKYAQK LQVGFCAATN QKNIQQILLE AQSRWLRPAE ICEILRNYKS FHIAPEPPNR  60
PTSGSLFLFD RKVLRYFRKD GHNWRKKKDN KTVKEAHEKL KDGSIDVLHC YYAHGEDNEK  120
FQRRTYWMLE EEYTHIVLVH YREVQVTNAE GFAPAKSAVD YSSLIKQLSL DFPNREGETG  180
LKKYDSFTRW MSKELGEVDE SQIRASSSVY WDTLESEGVI EDSGMPHNED AYLLGPSLSQ  240
DQLFSIIDFS PNWSYTTVET KVRVAGIFLV DKNQVYNSKW SCMFGEIEVP AEVSGDGTLT  300
CYAPLHKSGT VPFCVTCSNR LACSEIREFE YRVTHPHYTG LSDPFRGYSS EVLHMRFEKL  360
LSLDFERDQE PVSHISGEKL QLSNKIGSLL REDDDEWSNM IKLTSDLDPF PGKTMDPSLE  420
RALKDKLHAW LIYKIVEDGK GPAVLDKEGQ GVIHLAAALG YYWAIPPTIV AGVSIDFRDV  480
HGWTALHWAA YFGREKTVGV LFTLGAAPGA LTDPTPEFPS GRTPADLASS NGHKGIAGFL  540
AESSLTTHLS TLTLKELGTS NVTEVHGVDV AEDVARKSPL HTDDGNMEAG LSAIRNAAQA  600
AARIHQVFRI HSFQRKKLDE YGDDKFGMSD EQALSLISVK TNKAGQHGEP VAAAIQIQKK  660
FRGWKGRKEF LTIRQHIVKI QAHVRGHQVR KHYRKIVWTV GIVEKVILRW RRKGTGLRGF  720
KPEGSAASPA MRDQAGKEDD YDFLKEGRKQ TEARLEKALE RVKSMVQYPE ARDQYRRLLA  780
VVEDFQESKV VLERVLNDPE VIESDQMFDI DELLGDDPYM PTT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795547.10.0calmodulin-binding transcription activator 3-like isoform X1
RefseqXP_017699323.10.0calmodulin-binding transcription activator 3-like isoform X1
RefseqXP_026662106.10.0calmodulin-binding transcription activator 3-like isoform X3
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A1D1ZLF80.0A0A1D1ZLF8_9ARAE; Calmodulin-binding transcription activator 3
STRINGXP_008795547.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]