PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo14G0047400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 264aa    MW: 27602.8 Da    PI: 6.951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo14G0047400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-193281255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa a++aa+++++g
  Spipo14G0047400 32 RFRGVRKRP-WGRYAAEIRDP---GKKMRVWLGTFDTAEEAAMAYDAAAREFRG 81
                     69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-343295IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-223290IPR016177DNA-binding domain
PfamPF008473.6E-133281IPR001471AP2/ERF domain
CDDcd000185.64E-173289No hitNo description
Gene3DG3DSA:3.30.730.105.6E-313289IPR001471AP2/ERF domain
PROSITE profilePS5103223.633289IPR001471AP2/ERF domain
PRINTSPR003672.1E-103344IPR001471AP2/ERF domain
PRINTSPR003672.1E-105571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAPRAEKICA RGGVRGGGGG GGHESMGSGE DRFRGVRKRP WGRYAAEIRD PGKKMRVWLG  60
TFDTAEEAAM AYDAAAREFR GMKAKTNFPL AGGLPCVSST VESSSREAAA PFQSPDNNNN  120
NNPADRSSLD LPMSDPYLHR GGGAKAGAWF PFRAIPAVAY AGAPPAAHPL PKGFVFFDAF  180
SRSGKAATAE AIAATLPSPD PAGKISAKIR FPDESAGHDG DQSDSDSSSV VEDLQPQPQA  240
SPPRRLLLDL DLNISPPADV VEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-203390664ATERF1
3gcc_A9e-203390664ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-23erf domain protein 9