PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G44210.1

Common Name

ATERF9, ATERF-9, ERF080, ERF9, ERF-9, MLN1.14

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

ERF

Protein Properties

Length: 200aa MW: 22267.2 Da PI: 10.6262

Description

erf domain protein 9

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G44210.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.6	2e-20	32	81	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp gk++r++lg+f+taeeAa+a++ a+++++g AT5G44210.1 32 HFRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDTAAREFRG 81 69*****.******8...557**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.881	32	89	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.9E-33	32	89	IPR001471	AP2/ERF domain
CDD	cd00018	2.29E-30	32	89	No hit	No description
SuperFamily	SSF54171	1.37E-22	32	90	IPR016177	DNA-binding domain
Pfam	PF00847	8.2E-14	32	81	IPR001471	AP2/ERF domain
SMART	SM00380	3.9E-39	32	95	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-11	33	44	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-11	55	71	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006952	Biological Process	defense response
GO:0009873	Biological Process	ethylene-activated signaling pathway
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016020	Cellular Component	membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000037	anatomy	shoot apex
PO:0000084	anatomy	plant sperm cell
PO:0000230	anatomy	inflorescence meristem
PO:0000293	anatomy	guard cell
PO:0009005	anatomy	root
PO:0009009	anatomy	plant embryo
PO:0009010	anatomy	seed
PO:0009025	anatomy	vascular leaf
PO:0009029	anatomy	stamen
PO:0009031	anatomy	sepal
PO:0009032	anatomy	petal
PO:0009046	anatomy	flower
PO:0020137	anatomy	leaf apex
PO:0025022	anatomy	collective leaf structure
PO:0001078	developmental stage	plant embryo cotyledonary stage
PO:0001081	developmental stage	mature plant embryo stage
PO:0001185	developmental stage	plant embryo globular stage
PO:0004507	developmental stage	plant embryo bilateral stage
PO:0007611	developmental stage	petal differentiation and expansion stage
PO:0007616	developmental stage	flowering stage

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MAPRQANGRS IAVSEGGGGK TMTMTTMRKE VHFRGVRKRP WGRYAAEIRD PGKKTRVWLG 60 TFDTAEEAAR AYDTAAREFR GSKAKTNFPL PGESTTVNDG GENDSYVNRT TVTTAREMTR 120 QRFPFACHRE RKVVGGYASA GFFFDPSRAA SLRAELSRVC PVRFDPVNIE LSIGIRETVK 180 VEPRRELNLD LNLAPPVVDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-22	32	90	2	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	3e-22	29	90	2	64	ATERF1
3gcc_A	3e-22	29	90	2	64	ATERF1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.30087	0.0	floral meristem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	145358840	0.0
Genevisible	249087_at	0.0
Expression Atlas	AT5G44210	-
AtGenExpress	AT5G44210	-
ATTED-II	AT5G44210	-

Functional Description ? help Back to Top
Source	Description
TAIR	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
UniProt	Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11487705}.

Function -- GeneRIF ? help Back to Top
ERF9 and ERF14 are involved in the interaction between Piriformospora and Arabidopsis. Inactivation of these genes diminishes the P. indica-induced growth promotion and activates the expression of the PATHOGENESIS-RELATED genes. [PMID: 20505369] The transcriptional repressor ERF9 participates in plant defense mechanisms against necrotic fungi mediated by the DEAR1-dependent ethylene/JA signaling pathway. [PMID: 24157210]

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00542	DAP	27203113	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G44210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Regulation -- Hormone ? help Back to Top
Source	Hormone
AHD	ethylene

Interaction ? help Back to Top
Source	Intact With
IntAct	Search Q9FE67

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G44210

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB005239	0.0	AB005239.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLN1.
GenBank	AB047648	0.0	AB047648.1 Arabidopsis thaliana AtERF9 gene for ERF domain protein 9, complete cds.
GenBank	AY560856	0.0	AY560856.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g44210) mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_199234.1	1e-146	erf domain protein 9
Swissprot	Q9FE67	1e-147	ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBL	A0A178UA11	1e-143	A0A178UA11_ARATH; ERF9
STRING	AT5G44210.1	1e-145	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650
Representative plant	OGRP6	16	1718

Link Out ? help Back to Top
Phytozome	AT5G44210.1
Entrez Gene	834444
iHOP	AT5G44210
wikigenes	AT5G44210

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Ohta M,Matsui K,Hiratsu K,Shinshi H,Ohme-Takagi M Repression domains of class II ERF transcriptional repressors share an essential motif for active repression. Plant Cell, 2001. 13(8): p. 1959-68 [PMID:11487705] Nakano T,Suzuki K,Fujimura T,Shinshi H Genome-wide analysis of the ERF gene family in Arabidopsis and rice. Plant Physiol., 2006. 140(2): p. 411-32 [PMID:16407444] Mitra SK,Gantt JA,Ruby JF,Clouse SD,Goshe MB Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. J. Proteome Res., 2007. 6(5): p. 1933-50 [PMID:17432890] Mah Comparison between a coffee single copy chromosomal region and Arabidopsis duplicated counterparts evidenced high level synteny between the coffee genome and the ancestral Arabidopsis genome. Plant Mol. Biol., 2007. 64(6): p. 699-711 [PMID:17551672] Dombrecht B, et al. MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis. Plant Cell, 2007. 19(7): p. 2225-45 [PMID:17616737] Broekgaarden C, et al. Genotypic variation in genome-wide transcription profiles induced by insect feeding: Brassica oleracea--Pieris rapae interactions. BMC Genomics, 2007. 8: p. 239 [PMID:17640338] Manzano C,Abraham Z,L Identification of ubiquitinated proteins in Arabidopsis. Plant Mol. Biol., 2008. 68(1-2): p. 145-58 [PMID:18535787] Camehl I,Oelm Do ethylene response factorS9 and -14 repress PR gene expression in the interaction between Piriformospora indica and Arabidopsis? Plant Signal Behav, 2010. 5(8): p. 932-6 [PMID:20505369] Shin R,Jez JM,Basra A,Zhang B,Schachtman DP 14-3-3 proteins fine-tune plant nutrient metabolism. FEBS Lett., 2011. 585(1): p. 143-7 [PMID:21094157] Arabidopsis Interactome Mapping Consortium Evidence for network evolution in an Arabidopsis interactome map. Science, 2011. 333(6042): p. 601-7 [PMID:21798944] Maruyama Y, et al. The Arabidopsis transcriptional repressor ERF9 participates in resistance against necrotrophic fungi. Plant Sci., 2013. 213: p. 79-87 [PMID:24157210] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470] Riechmann JL,Meyerowitz EM The AP2/EREBP family of plant transcription factors. Biol. Chem., 1998. 379(6): p. 633-46 [PMID:9687012]