PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo14G0014800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

C3H

Protein Properties

Length: 390aa MW: 42889.1 Da PI: 6.3158

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo14G0014800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.9	8.1e-09	145	166	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck+Gd C +aHg Spipo14G0014800 145 VACPDFRK-GVCKRGDACEYAHG 166 68****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	7.8E-6	141	167	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.328	142	168	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.9E-7	145	166	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	147	168	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.268	176	200	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	15	176	199	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MILGEGPRPS PMFQVPPWQI CDDPMSGVPY SIPVSGVAGG NGGDCSSFLL SEAALAALQR 60 FLPSNEPYVY EETRRGVEQE EEEAEEEDLL DSPVDAYSCD EFRMYEFKVR RCVRGRSHDW 120 TECPYAHPGE KARRRDPRKF HYSGVACPDF RKGVCKRGDA CEYAHGVFEC WLHPSRYRTQ 180 ACKDGVNCRR RVCFFAHTPE QLRVVPQAQQ QQQQQSPPVS SVLDSYFSKG LASSPTSTLM 240 SPPMSPPSDS PPLSPSGHSL RRSPAPVGSS PINGVLASLR RLQLSKAKSV PSSWGLQQVS 300 GVGSPRGVVN VRPGFCSLPT TPTAASSGGL FDEWTEPTER VESGRDLRVK IYEKLSREFS 360 MGRSHEEEDE ARAAAAMAPD VGWVSDLVM*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MILGEGPRPS PMFQVPPWQI CDDPMSGVPY SIPVSGVAGG NGGDCSSFLL SEAALAALQR  60
FLPSNEPYVY EETRRGVEQE EEEAEEEDLL DSPVDAYSCD EFRMYEFKVR RCVRGRSHDW  120
TECPYAHPGE KARRRDPRKF HYSGVACPDF RKGVCKRGDA CEYAHGVFEC WLHPSRYRTQ  180
ACKDGVNCRR RVCFFAHTPE QLRVVPQAQQ QQQQQSPPVS SVLDSYFSKG LASSPTSTLM  240
SPPMSPPSDS PPLSPSGHSL RRSPAPVGSS PINGVLASLR RLQLSKAKSV PSSWGLQQVS  300
GVGSPRGVVN VRPGFCSLPT TPTAASSGGL FDEWTEPTER VESGRDLRVK IYEKLSREFS  360
MGRSHEEEDE ARAAAAMAPD VGWVSDLVM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010925500.1	1e-141	zinc finger CCCH domain-containing protein 2
Swissprot	Q9M0G2	1e-113	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A0A1D1XN00	1e-145	A0A1D1XN00_9ARAE; Zinc finger CCCH domain-containing protein 2 (Fragment)
STRING	XP_010244375.1	1e-138	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	1e-97	C3H family protein

Link Out ? help Back to Top
Phytozome	Spipo14G0014800

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]