PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo13G0023100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 167aa    MW: 17833.1 Da    PI: 9.6962
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo13G0023100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000124062123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C +C+++F+++  L  H++ H
  Spipo13G0023100 40 FHCLYCSRRFTTSQALGGHQNAH 62
                     78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.7E-63767No hitNo description
Gene3DG3DSA:3.30.160.600.0013866IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.8E-63964IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.3234067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MEKQPQEEVF FALLKPPLPA SPSPRSSPGG RKQPPTNRRF HCLYCSRRFT TSQALGGHQN  60
AHRRERAAAA AAARRSGSAI SSDSFLRAAT APSPTPSRSA APLRPALWIE PPSPVFYVYY  120
DGCCLRLDQP AGVPSATCDS SSSSPSPSPP GRQPLVDLDL DLSLHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.12e-06C2H2 family protein