PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo13G0001400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 196aa    MW: 21192.1 Da    PI: 8.7915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo13G0001400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-192777155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr++   g+Wv+e+r+p+    + kr++lg+f t+e+Aa+a++ a+++l+g
  Spipo13G0001400 27 PVYRGVRQRN-GGKWVCEVREPR----NeKRHWLGTFTTPEMAARAHDVAALALRG 77
                     68*****999.9******99984....35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-132777IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-312887IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-212887IPR016177DNA-binding domain
SMARTSM003803.3E-272891IPR001471AP2/ERF domain
PROSITE profilePS5103222.6422885IPR001471AP2/ERF domain
CDDcd000182.24E-262987No hitNo description
PRINTSPR003672.9E-112940IPR001471AP2/ERF domain
PRINTSPR003672.9E-116787IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAVGPCNPNL MEKRRAGRKK FRETRHPVYR GVRQRNGGKW VCEVREPRNE KRHWLGTFTT  60
PEMAARAHDV AALALRGRSA ALNFPDSEWL LPRAQSPAAN DIRSAVAEAA AMFRHPAPAS  120
VAAPSSSPPP PPRPVETPAP PAAAFLDEEA LFDLPGLLVS MAEGVLLSPT SLFGAVDWDH  180
VDGHLDASAS PWALW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1326851272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:16244146}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress (PubMed:9735350). Subject to degradation by the 26S proteasome pathway in freezing conditions (PubMed:28344081). {ECO:0000269|PubMed:28344081, ECO:0000269|PubMed:9735350}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940400.12e-66dehydration-responsive element-binding protein 1F
SwissprotP938351e-52DRE1B_ARATH; Dehydration-responsive element-binding protein 1B
TrEMBLA0A3S3NB512e-64A0A3S3NB51_9MAGN; Dehydration-responsive element-binding protein 1B-like protein
STRINGXP_008807522.19e-64(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-36C-repeat-binding factor 4
Publications ? help Back to Top
  1. Keily J, et al.
    Model selection reveals control of cold signalling by evening-phased components of the plant circadian clock.
    Plant J., 2013. 76(2): p. 247-57
    [PMID:23909712]
  2. Shi H, et al.
    The Cysteine2/Histidine2-Type Transcription Factor ZINC FINGER OF ARABIDOPSIS THALIANA6 Modulates Biotic and Abiotic Stress Responses by Activating Salicylic Acid-Related Genes and C-REPEAT-BINDING FACTOR Genes in Arabidopsis.
    Plant Physiol., 2014. 165(3): p. 1367-1379
    [PMID:24834923]
  3. Xu F, et al.
    Increased drought tolerance through the suppression of ESKMO1 gene and overexpression of CBF-related genes in Arabidopsis.
    PLoS ONE, 2014. 9(9): p. e106509
    [PMID:25184213]
  4. Bello B, et al.
    Cloning of Gossypium hirsutum sucrose non-fermenting 1-related protein kinase 2 gene (GhSnRK2) and its overexpression in transgenic Arabidopsis escalates drought and low temperature tolerance.
    PLoS ONE, 2014. 9(11): p. e112269
    [PMID:25393623]
  5. Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T
    Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana.
    Plant Cell Rep., 2015. 34(5): p. 843-52
    [PMID:25627253]
  6. Jiang W,Wu J,Zhang Y,Yin L,Lu J
    Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses.
    Protoplasma, 2015. 252(5): p. 1361-74
    [PMID:25643917]
  7. Park S, et al.
    Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network.
    Plant J., 2015. 82(2): p. 193-207
    [PMID:25736223]
  8. Catalá R,Salinas J
    The Arabidopsis ethylene overproducer mutant eto1-3 displays enhanced freezing tolerance.
    Plant Signal Behav, 2015. 10(3): p. e989768
    [PMID:25850018]
  9. Shi H,Qian Y,Tan DX,Reiter RJ,He C
    Melatonin induces the transcripts of CBF/DREB1s and their involvement in both abiotic and biotic stresses in Arabidopsis.
    J. Pineal Res., 2015. 59(3): p. 334-42
    [PMID:26182834]
  10. Wang CL,Zhang SC,Qi SD,Zheng CC,Wu CA
    Delayed germination of Arabidopsis seeds under chilling stress by overexpressing an abiotic stress inducible GhTPS11.
    Gene, 2016. 575(2 Pt 1): p. 206-12
    [PMID:26325072]
  11. Gehan MA, et al.
    Natural variation in the C-repeat binding factor cold response pathway correlates with local adaptation of Arabidopsis ecotypes.
    Plant J., 2015. 84(4): p. 682-93
    [PMID:26369909]
  12. Su F, et al.
    Burkholderia phytofirmans PsJN reduces impact of freezing temperatures on photosynthesis in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 810
    [PMID:26483823]
  13. Gao S, et al.
    A cotton miRNA is involved in regulation of plant response to salt stress.
    Sci Rep, 2016. 6: p. 19736
    [PMID:26813144]
  14. Shi H,Wei Y,He C
    Melatonin-induced CBF/DREB1s are essential for diurnal change of disease resistance and CCA1 expression in Arabidopsis.
    Plant Physiol. Biochem., 2016. 100: p. 150-155
    [PMID:26828406]
  15. Wei T, et al.
    Arabidopsis DREB1B in transgenic Salvia miltiorrhiza increased tolerance to drought stress without stunting growth.
    Plant Physiol. Biochem., 2016. 104: p. 17-28
    [PMID:27002402]
  16. Norén L, et al.
    Circadian and Plastid Signaling Pathways Are Integrated to Ensure Correct Expression of the CBF and COR Genes during Photoperiodic Growth.
    Plant Physiol., 2016. 171(2): p. 1392-406
    [PMID:27208227]
  17. Zhao C, et al.
    Mutational Evidence for the Critical Role of CBF Transcription Factors in Cold Acclimation in Arabidopsis.
    Plant Physiol., 2016. 171(4): p. 2744-59
    [PMID:27252305]
  18. Jia Y, et al.
    The cbfs triple mutants reveal the essential functions of CBFs in cold acclimation and allow the definition of CBF regulons in Arabidopsis.
    New Phytol., 2016. 212(2): p. 345-53
    [PMID:27353960]
  19. Zhao C,Zhu JK
    The broad roles of CBF genes: From development to abiotic stress.
    Plant Signal Behav, 2016. 11(8): p. e1215794
    [PMID:27472659]
  20. Li P, et al.
    The Arabidopsis UDP-glycosyltransferases UGT79B2 and UGT79B3, contribute to cold, salt and drought stress tolerance via modulating anthocyanin accumulation.
    Plant J., 2017. 89(1): p. 85-103
    [PMID:27599367]
  21. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  22. Shi Y, et al.
    The precise regulation of different COR genes by individual CBF transcription factors in Arabidopsis thaliana.
    J Integr Plant Biol, 2017. 59(2): p. 118-133
    [PMID:28009483]
  23. Zhou M,Chen H,Wei D,Ma H,Lin J
    Arabidopsis CBF3 and DELLAs positively regulate each other in response to low temperature.
    Sci Rep, 2017. 7: p. 39819
    [PMID:28051152]
  24. Li H, et al.
    BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis.
    Mol Plant, 2017. 10(4): p. 545-559
    [PMID:28089951]
  25. Liu Z, et al.
    Plasma Membrane CRPK1-Mediated Phosphorylation of 14-3-3 Proteins Induces Their Nuclear Import to Fine-Tune CBF Signaling during Cold Response.
    Mol. Cell, 2017. 66(1): p. 117-128.e5
    [PMID:28344081]
  26. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  27. Yang L, et al.
    Systematic analysis of the G-box Factor 14-3-3 gene family and functional characterization of GF14a in Brachypodium distachyon.
    Plant Physiol. Biochem., 2017. 117: p. 1-11
    [PMID:28575641]
  28. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  29. Cho S, et al.
    Accession-Dependent CBF Gene Deletion by CRISPR/Cas System in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1910
    [PMID:29163623]
  30. Beine-Golovchuk O, et al.
    Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs.
    Plant Physiol., 2018. 176(3): p. 2251-2276
    [PMID:29382692]
  31. Meng LS,Xu MK,Wan W,Wang JY
    Integration of Environmental and Developmental (or Metabolic) Control of Seed Mass by Sugar and Ethylene Metabolisms in Arabidopsis.
    J. Agric. Food Chem., 2018. 66(13): p. 3477-3488
    [PMID:29528636]