PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo12G0064700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 209aa    MW: 22631.4 Da    PI: 8.7111
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo12G0064700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-194089255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +kG+r ++ +grWv+eIr p++   r+r++lg+++t+e+Aa+a++aa  +l+g
  Spipo12G0064700 40 PFKGIRMRR-WGRWVSEIRIPRS---RTRIWLGSYDTPEKAARAYDAALYCLHG 89
                     69****998.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.0354097IPR001471AP2/ERF domain
SMARTSM003801.1E-3040103IPR001471AP2/ERF domain
PRINTSPR003671.0E-84152IPR001471AP2/ERF domain
CDDcd000182.74E-264198No hitNo description
Gene3DG3DSA:3.30.730.108.1E-274199IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-194198IPR016177DNA-binding domain
PfamPF008471.7E-114189IPR001471AP2/ERF domain
PRINTSPR003671.0E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAFGAEDGDG ATLSPSPTRG QLRQEQEQRA AAAADAGQKP FKGIRMRRWG RWVSEIRIPR  60
SRTRIWLGSY DTPEKAARAY DAALYCLHGV RGRFNFPDEK RPGFPEELRL ALSKSDIKAI  120
AARFASSSPL PSPQGSGHLP PSSPAVSAPH RPAFAGRWPS EESGLIPKVT YDDDVVNPSM  180
GVDCGSPPFG LDDFLLRDPS ASGTWDLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-12401031478Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00463DAPTransfer from AT4G31060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6NLD58e-33ERF15_ARATH; Ethylene-responsive transcription factor ERF015
TrEMBLA0A3S3N2G12e-39A0A3S3N2G1_9MAGN; AP2/ERF domain-containing protein
STRINGAquca_002_00165.12e-38(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.11e-33ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]