PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G31060.1
Common NameERF015, F6I18.30
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 187aa    MW: 20810.6 Da    PI: 6.7885
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G31060.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-192676256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr ++ +g+Wv+eIr+p+    + +r++lg+++ +e+Aa+a++aa  +++ge
  AT4G31060.1 26 CYRGVRKRS-WGKWVSEIRVPK----TgRRIWLGSYDAPEKAARAYDAALFCIRGE 76
                 8*****888.**********95....35**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-122676IPR001471AP2/ERF domain
PROSITE profilePS5103221.9972683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-282684IPR001471AP2/ERF domain
SMARTSM003803.8E-362689IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-202684IPR016177DNA-binding domain
PRINTSPR003672.2E-92738IPR001471AP2/ERF domain
CDDcd000183.67E-332785No hitNo description
PRINTSPR003672.2E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MPPSPPKSPF ISSSLKGAHE DRKFKCYRGV RKRSWGKWVS EIRVPKTGRR IWLGSYDAPE  60
KAARAYDAAL FCIRGEKGVY NFPTDKKPQL PEGSVRPLSK LDIQTIATNY ASSVVHVPSH  120
ATTLPATTQV PSEVPASSDV SASTEITEMV DEYYLPTDAT AESIFSVEDL QLDSFLMMDI  180
DWINNLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1627851574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.317790.0silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO3341870480.0
Genevisible253575_at0.0
Expression AtlasAT4G31060-
AtGenExpressAT4G31060-
ATTED-IIAT4G31060-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00463DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G31060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G31060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0221980.0AL022198.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSA project).
GenBankAL1615780.0AL161578.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 74.
GenBankBT0117740.0BT011774.1 Arabidopsis thaliana At4g31060 mRNA, complete cds.
GenBankBT0123990.0BT012399.1 Arabidopsis thaliana At4g31060 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_567867.11e-137Integrase-type DNA-binding superfamily protein
SwissprotQ6NLD51e-138ERF15_ARATH; Ethylene-responsive transcription factor ERF015
TrEMBLA0A384LCY21e-136A0A384LCY2_ARATH; Uncharacterized protein
TrEMBLC0SVK91e-136C0SVK9_ARATH; Uncharacterized protein At4g31060 (Fragment)
STRINGAT4G31060.11e-137(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148991620
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Brown RL,Kazan K,McGrath KC,Maclean DJ,Manners JM
    A role for the GCC-box in jasmonate-mediated activation of the PDF1.2 gene of Arabidopsis.
    Plant Physiol., 2003. 132(2): p. 1020-32
    [PMID:12805630]
  3. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  4. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  5. Hsieh TF, et al.
    Regulation of imprinted gene expression in Arabidopsis endosperm.
    Proc. Natl. Acad. Sci. U.S.A., 2011. 108(5): p. 1755-62
    [PMID:21257907]
  6. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]